Sample 3300002375

Basic Information
IMG/M Taxon OID	3300002375 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063444 \| Gp0055646 \| Ga0003623
Sample Name	Freshwater microbial communities from Lake Mendota, WI - 21SEP2011 deep hole epilimnion
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300002375 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0063444 | Gp0055646 | Ga0003623

Sample Name

Freshwater microbial communities from Lake Mendota, WI - 21SEP2011 deep hole epilimnion

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	28473979
Sequencing Scaffolds	29
Novel Protein Genes	33
Associated Families	32

Dataset Contents

Total Genome Size

28473979

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2
All Organisms → cellular organisms → Eukaryota	1
All Organisms → Viruses → Predicted Viral	2
Not Available	16
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Branchiopoda → Phyllopoda → Diplostraca → Cladocera → Anomopoda → Daphniidae → Daphnia → Daphnia pulex	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Lachnoclostridium → Lachnoclostridium phytofermentans	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Bacteria

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

All Organisms → cellular organisms → Eukaryota

All Organisms → Viruses → Predicted Viral

Not Available

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Branchiopoda → Phyllopoda → Diplostraca → Cladocera → Anomopoda → Daphniidae → Daphnia → Daphnia pulex

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Lachnoclostridium → Lachnoclostridium phytofermentans

Ecosystem Assignment (GOLD)
Name	Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Ecosystem Assignment (GOLD)

Name

Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Type

Environmental

Taxonomy

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater lake biome → epilimnion → lake water
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

freshwater lake biome → epilimnion → lake water

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Water (non-saline)

Location Information
Location	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

Zoom:	Powered by OpenStreetMap^©

Location Information

Location

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.098333

Long. (^o)

-89.405278

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000376	Metagenome / Metatranscriptome	1216	Y
F000450	Metagenome / Metatranscriptome	1126	Y
F000473	Metagenome / Metatranscriptome	1097	Y
F000716	Metagenome / Metatranscriptome	923	Y
F000865	Metagenome / Metatranscriptome	855	Y
F001871	Metagenome / Metatranscriptome	623	Y
F002540	Metagenome / Metatranscriptome	550	Y
F007751	Metagenome / Metatranscriptome	345	Y
F008305	Metagenome / Metatranscriptome	335	Y
F009205	Metagenome / Metatranscriptome	321	N
F010464	Metagenome / Metatranscriptome	303	N
F012767	Metagenome	277	Y
F018650	Metagenome / Metatranscriptome	234	N
F020324	Metagenome	224	Y
F021942	Metagenome / Metatranscriptome	216	N
F024039	Metagenome / Metatranscriptome	207	Y
F024549	Metagenome / Metatranscriptome	205	Y
F029726	Metagenome	187	N
F029991	Metagenome / Metatranscriptome	186	N
F035194	Metagenome / Metatranscriptome	172	N
F038207	Metagenome / Metatranscriptome	166	N
F053090	Metagenome / Metatranscriptome	141	N
F057913	Metagenome / Metatranscriptome	135	Y
F058689	Metagenome / Metatranscriptome	134	Y
F066724	Metagenome / Metatranscriptome	126	N
F068816	Metagenome / Metatranscriptome	124	Y
F071228	Metagenome / Metatranscriptome	122	N
F079377	Metagenome / Metatranscriptome	116	N
F083751	Metagenome / Metatranscriptome	112	N
F087125	Metagenome	110	Y
F102592	Metagenome / Metatranscriptome	101	N
F102618	Metagenome	101	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
B570J29617_1000017	All Organisms → cellular organisms → Bacteria	8181	Open in IMG/M
B570J29617_1000055	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	3971	Open in IMG/M
B570J29617_1000690	All Organisms → cellular organisms → Bacteria	1599	Open in IMG/M
B570J29617_1001281	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102	1281	Open in IMG/M
B570J29617_1001554	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium	1188	Open in IMG/M
B570J29617_1001571	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1182	Open in IMG/M
B570J29617_1001615	All Organisms → cellular organisms → Eukaryota	1170	Open in IMG/M
B570J29617_1002034	All Organisms → Viruses → Predicted Viral	1068	Open in IMG/M
B570J29617_1002065	All Organisms → Viruses → Predicted Viral	1062	Open in IMG/M
B570J29617_1002671	Not Available	960	Open in IMG/M
B570J29617_1002845	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi	935	Open in IMG/M
B570J29617_1003940	Not Available	819	Open in IMG/M
B570J29617_1004902	Not Available	749	Open in IMG/M
B570J29617_1004917	Not Available	749	Open in IMG/M
B570J29617_1005074	Not Available	738	Open in IMG/M
B570J29617_1006463	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Branchiopoda → Phyllopoda → Diplostraca → Cladocera → Anomopoda → Daphniidae → Daphnia → Daphnia pulex	665	Open in IMG/M
B570J29617_1007180	Not Available	639	Open in IMG/M
B570J29617_1007547	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Lachnoclostridium → Lachnoclostridium phytofermentans	625	Open in IMG/M
B570J29617_1007617	Not Available	623	Open in IMG/M
B570J29617_1008317	Not Available	601	Open in IMG/M
B570J29617_1008432	Not Available	597	Open in IMG/M
B570J29617_1008547	Not Available	594	Open in IMG/M
B570J29617_1008839	Not Available	585	Open in IMG/M
B570J29617_1010040	Not Available	557	Open in IMG/M
B570J29617_1011467	Not Available	527	Open in IMG/M
B570J29617_1011586	Not Available	525	Open in IMG/M
B570J29617_1011987	Not Available	516	Open in IMG/M
B570J29617_1012448	Not Available	508	Open in IMG/M
B570J29617_1012670	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	504	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
B570J29617_1000017	B570J29617_100001710	F000716	MEKLKKQINDYQLYTGNTYMQYEQDTYNSYQNYLYKRALYGIQAIDEKELTAMCSKKKQRIVNVYKRAQSVLNIAKQKVTIHYTNLLFKQLFPTSPFTEMLLKESETDISFKNTLTFKDLNMKKEDIIFIFMSEGILPKNFLNLTKEPVTLPRLKNEKT*
B570J29617_1000055	B570J29617_10000551	F068816	MSVDSATIALFNERNNMPNWVYNTLTIQGPKSEIDFIKDKLNEPFMVWHDSWNMETMKMEITESTYSNPVFAFWNIHSPLQDGITMQEYVQQPTRLGTDTSAPDWFAKEVAHAMTQKDWYSWNTTNWGTKWDVAVSDGDEYPDTELLEHESNGDDNWLVYKY
B570J29617_1000690	B570J29617_10006901	F087125	MSENAAADFKMFDLRGIDWPEVSSSRTPSGIRVNADNSMACSAY
B570J29617_1001281	B570J29617_10012814	F000376	QEKAKECKCCGKHVPLPTVLKEYNGLMICPTTFSNIIEYTRIWNAIGSRPPGNVRKHFSEYVQQIVEANISGGKNAI*
B570J29617_1001479	B570J29617_10014791	F029726	QYAINSASQSIEPNCRMNVQRVHHSTYSLEFKNLSEAKLKISTLCDVPQAYTSLTVKFEEVLPNGGNNVVKTVRNIVARPKPERENYVLIENLTVPCNGKGQAEYIGKAFGQIHLKDNRTVPVSGESDKPMPSICRISAK*
B570J29617_1001554	B570J29617_10015541	F000473	MFIDKDKNHFKHGINQWTGXPNKPVFYTPEMSKAIRGITKPANNLQMDIVKYPEFLAIRLYENNFVQFEGVKKEMVIDYVAKVKKLLESYGVRCELEGVPSERILR*
B570J29617_1001571	B570J29617_10015711	F102618	ENEYLAAVAGLHEQTPSPAHKKPEPAVGDFVSGKTAGRYWSGRVEWVNERGEICVNTDGSWVYVPMADITH*
B570J29617_1001615	B570J29617_10016151	F018650	LLPEINRLAEKYADWWTFKPSSPLKAYLSDREIVMDEYFSLEELRYRVMSILEHAAQFPNNSDVIVLADQELQMVFDSWYIFVPDIIENHLLSHVIPAPVDISNDLQNKHMIEDFFVYSPVDIIYKDPSSVFWIHPFVDFAMNRSTGNVGSWNKLLFMFTEFCLNNTTYFTRFSDSIIGINVNTSLTSLFDFKFFHLSQVETLLQQITKFLGRKNSMIQSCHFITHNPTFDYITSIHPNVFTFIDYIINNHNDMMPDFKTGIFNI*
B570J29617_1002034	B570J29617_10020341	F071228	NGETTYSTEKVVDIEWALEQGRRADDLYNGLKLKVNELEELLVELYNPNYTKEEALQQISELFGFELSKTVTVTGTINFEVTVQVPLDEIDNFDAHYKLGDELSLTSYGNDVEVNDWSIEDTDVDWN*
B570J29617_1002065	B570J29617_10020651	F008305	MLGYTYKDIQNFGNSLTVAIDSASDPDVKQGLLTIWDFFEGLLAEGYIDEN
B570J29617_1002065	B570J29617_10020653	F000450	DGAGDTICLYGHWAGYNMLGKLADAVIAARPRWTDESYATRIAISQLIGDQWNMETGWGLQVNSIGDNEHKIAVINWKDQTFSLHEQDDHRNLDNKVRGMKNEAIFTMDLSAFCEKYALERLLV*
B570J29617_1002671	B570J29617_10026712	F012767	MRGITSTISVAAFHADWMTHMPMRALCERWTISRDQVIRLAVVWELPRRHDRKLRAKPLRQRDPTTTEIQQACIRIQATWSKDVEEERRVVKSQAFSMKRIPLDSATRSHIDVEYNGDCDVWEERP*
B570J29617_1002845	B570J29617_10028451	F024549	VGYLMYRLDTYYDGKLEYTYQFADALQAFEAFAKCYDVGFADELATYNLSMPNGKMYTKNFNRIGLVSQK*
B570J29617_1003940	B570J29617_10039401	F002540	PAELEQYGSKLTIWQQLALLQAWSPLIGYGQRFINETDPYKRSIIVSEASEWLASKTNAQADDQLVRLLGDLLKTKQGEALVRWCLLQVEAVR*
B570J29617_1004902	B570J29617_10049023	F021942	GVSLTIYQPENLASLIKSRRAKQDNKSVIEQFKKARQSAVATH*
B570J29617_1004917	B570J29617_10049171	F058689	MKNQIIEVNKLDLTWKQSFLILVDSELFERRSLYQFERLSEETYQTISTRYLKKIQHSEH
B570J29617_1004917	B570J29617_10049172	F057913	MANNDDIQVDLNQDQDGQVVQNVPAGAQTTLAFRVDQSKIPEFWGQKSKDTITAIVFIRKIEDLARTNHWTDTATYAHVANGFKGFAREWLFATADMLDWTEAQLTWTNLKPR
B570J29617_1005074	B570J29617_10050741	F079377	MPQ*SFFQTAGPTDFQNVLGISFLPANFTIDENNFSSITENSLVVLDDFSFKLANNKQAKINFLKV
B570J29617_1006463	B570J29617_10064631	F035194	KLRKLAHTNATEKGEKTKEQYDKNSMPHNFHIGDKVLIANDFDTTKNPKLVPNWKGPGEIIDINDTNAKIKFKNKVKVLNVAKLKHFYENVEKSAEKESEAETFNQNFNQSENAHHDFNDIFNKAXNEGPXTRAKAKLIKYQDAAQLALLLLKSENDTINSLCDPSKHCGRCESEETYLAESKTLPFQWRQLKLAENRCKQWRLKLMKREAEKINSTEERC
B570J29617_1006751	B570J29617_10067511	F066724	YPWMGFEYPPGQPYGSWTSPPIPTFRKTSTLFWEPQRGQSFCSTSGAGSTISSSSGQVGLPRKKIRIEEVTDSDPQPESVSSSQASQPKQVGNVRAAGVGSTQVRRDESFAKLGRKAQLYETAKDRFQKCLIYHNQHFHETLSEADFIKKAEVKPTLETSEVSKRKRKNLARLERRKAKALAEQLMTAPVEASVPTVQPSATVLDDAEMAVVEAAIS
B570J29617_1007180	B570J29617_10071801	F102592	VDDDDITVPDPVYMKWPKNFTCQDSPTPVLKIQYEGLSNTTSPHRNPAFITLTNKKAFTIPSCNYAIIHFPVLVRTSLPAVSILYNNDFLYKHGLTCVINQIPTNDTLLHIKVFNYKLIPLTFEKESLQFICHTVLAKYP*
B570J29617_1007547	B570J29617_10075471	F001871	MTLFNGDQKDTKIIGTVNGKNFYWKIDTGSAVTCMNINAFETAFGKTMDKTKEFKTDIFIKNRKCTHTVQLADESSENVLGIDFLQKFRLRVDPRTEEFTFQAAPSRALFATKNFTIPPFATILAQARTFQDINPELHYIADIGAPKQPLISGLS
B570J29617_1007617	B570J29617_10076172	F007751	MVRRYITQVGGKIKNKIMNCIEDLKAVIGKEVSQNQSPTCRARLVSVGKSNCIFESVVSPYDKFPKAEFVGVKYKIPNWIAWNSFFF*
B570J29617_1008317	B570J29617_10083172	F024039	MRKQRTVDYFNNKYKLLLTDFDVADAFGIAHYSNEVLTKR*
B570J29617_1008432	B570J29617_10084321	F053090	IDTYISSKHKNSEDNELPAKKLKLNDKKIAILEYSSVQLPLAPFIDYIEKYSKTFVDQCLTYNNSNETTD*
B570J29617_1008547	B570J29617_10085471	F000865	SFICIFSILNSFVADPLDHHFQTFTIGDLSDCKLRHLSRQTASIQADTVVKTLANPDSIRPFKIPGTWPDVHYKSRSRNPLVPSHLLSGRVRKSETKFHHDSFIFDYLDSSR*
B570J29617_1008839	B570J29617_10088391	F083751	LFKLLFLILHKIFPLENALTEIMTLRKFVYLFKXLSSAYTVITRIXKFFVS*
B570J29617_1010040	B570J29617_10100401	F029991	MHEKTLFPGDETSHSFANNKYRRHMLSFPMYPFRTLCPRDAYNMNILKGGNSEFDQTSPLLPANTQLNIKFTRRPAAHLLSYMLPTNLNLNLGASHNALTQTERNNALNFTVTTPVETQYTITGIAINIQNMYLQVSKIFYIKILKYLK
B570J29617_1011467	B570J29617_10114671	F053090	VGLKLKYQFDEELIDTYISSKHKNNKVDEQPAKKLKLNNRKKISILEYSCVQLPLVPFIDYLEKYSKTFVDQCLTYNNSNET
B570J29617_1011586	B570J29617_10115861	F009205	LKNTVLPAMTSTVIKAXFKGTRDEKATYVANICAPRTPMVSGMPSIVNIDENNICNIIVENCAPYDVTLERDDILGVMETETDELVPLTDDFISSVCQDIHNRFPKVKRKRLSRXEXKRRCHLQVPEEFHERYXDIXCKHQDALSIDKYDLGLAKDFKHKIHLKTQDPVYRKQF
B570J29617_1011987	B570J29617_10119872	F020324	MSPVATLRYRLPDEQGEFDAARLGSKALITLWEIDQRCRSLLKHGDPTPEQARLAQDIRAMIDGELLDT*
B570J29617_1012448	B570J29617_10124481	F038207	KMSEVESKKFYEKTSFRVFIFVATIVFIFLIIYFLGYFSSPSKVEIKSPTQAVSYQNNMQKTMDRLKELLLGDNETQEAGKKNEFLEKEIKEIAEKFTMATPSNPSRFERRVKRAAKVGDAVISELLTKIQASVARQEESIEALRVCLKVLLKKGKEGHPSVALIQERV
B570J29617_1012670	B570J29617_10126702	F010464	SVAAIVGGAVAWFTKGRVESDSLQVRQAQAVLAMWQATSESQNKELTQLRNEVVSLRQRLEDMEQLVHELQAENAKLKNLA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300002375: Freshwater microbial communities from Lake Mendota, WI - 21SEP2011 deep hole epilimnion

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences