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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300002542 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0110114 | Gp0061315 | Ga0006566 |
| Sample Name | Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, USA - AR20-3-D |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | Y |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 173711512 |
| Sequencing Scaffolds | 0 |
| Novel Protein Genes | 2 |
| Associated Families | 2 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa |
| Type | Engineered |
| Taxonomy | Engineered → Lab Enrichment → Defined Media → Unclassified → Unclassified → Ionic Liquid And High Solid Enriched → Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Joint BioEnergy Institute, California, USA | |||||||
| Coordinates | Lat. (o) | 38.5402 | Long. (o) | -121.75 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F025338 | Metagenome / Metatranscriptome | 202 | Y |
| F072997 | Metagenome | 120 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| JGI25328J35697_1035366 | JGI25328J35697_10353661 | F072997 | VRCENIRRDFVARTFALIAPVRPILHRVYCRNKMLPNAPKXYETHHNMSLGSDAVDWADLLQRILLQLCGLNFCFNCNSSA*FEPSIVKQRNGPKCTQTLRNKTKHDFRFQWGWISCIRCEKFGNDFVA*TFALIAPVQPISHRVSCSNEMVPNAPKHYETQQKLSLGSNGVDQVHSLQKLPTQVRGTIF*INWTISAHFALSLLP* |
| JGI25328J35697_1039906 | JGI25328J35697_10399061 | F025338 | MSVSGADRTRKLLTVGVGTVLIVVMGAVLIAGFRLATQMNANVAALQTASMLQTYPAALAQHLTSLRDRLEARAYAGQALADLRTTVESFDRDLKRLASGPAEGPMQIDQAMMLWRQYAPVLEPVLAFNGQPYIDTDEAGSVLSKEGLEHYADVKRAHLFARE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |