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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300002687 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0046785 | Gp0054873 | Ga0005276 |
| Sample Name | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI075_200m_A (Metagenome Metatranscriptome) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | Y |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 31187935 |
| Sequencing Scaffolds | 7 |
| Novel Protein Genes | 8 |
| Associated Families | 8 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Archaea | 1 |
| Not Available | 5 |
| All Organisms → Viruses → Predicted Viral | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → coastal inlet → sea water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | British Columbia, Canada | |||||||
| Coordinates | Lat. (o) | 48.7299 | Long. (o) | -123.5699 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000155 | Metagenome / Metatranscriptome | 1877 | Y |
| F015413 | Metagenome / Metatranscriptome | 255 | Y |
| F020371 | Metagenome / Metatranscriptome | 224 | Y |
| F046996 | Metagenome / Metatranscriptome | 150 | Y |
| F077350 | Metagenome / Metatranscriptome | 117 | Y |
| F081198 | Metagenome / Metatranscriptome | 114 | N |
| F096688 | Metagenome / Metatranscriptome | 104 | N |
| F099485 | Metagenome / Metatranscriptome | 103 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0005276J37295_1004707 | All Organisms → cellular organisms → Archaea | 809 | Open in IMG/M |
| Ga0005276J37295_1004864 | Not Available | 523 | Open in IMG/M |
| Ga0005276J37295_1005778 | All Organisms → Viruses → Predicted Viral | 1190 | Open in IMG/M |
| Ga0005276J37295_1009227 | Not Available | 1620 | Open in IMG/M |
| Ga0005276J37295_1010630 | Not Available | 661 | Open in IMG/M |
| Ga0005276J37295_1022035 | Not Available | 829 | Open in IMG/M |
| Ga0005276J37295_1051275 | Not Available | 733 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0005276J37295_1004707 | Ga0005276J37295_10047071 | F099485 | RNWQHSPSKTQVASTPVKAVSKSLQQSQTFTHEDLMGLSWMLSEEGD* |
| Ga0005276J37295_1004864 | Ga0005276J37295_10048641 | F096688 | FLCHRQNEFRTDNEGKLMGIIKSLAVVGYATVMLLVLTGGRSANEAEFNAGHQACDAQYNMDAMQAFEMDPSEPFVQCHVAVNEAYPAAWNNWRRQNARSRGLELAGNRFRGGGGC* |
| Ga0005276J37295_1005778 | Ga0005276J37295_10057781 | F081198 | DATAKVAERIEKSNEDTLKAVIETVKDAWQPKSEVAESTNQGYVEEQFDDESAKKFLDKVFENGYGRLVIDKEGWIENHTQEGRITANGSVEEAVGVSGTIPGVKQRANISVQIGNKTATSIRQYGQFEALPTGQTTARFYRITVPDAGAITESVSSDISASTHTLTSIDVTCAIRGWRQTILKAQLEDYPASFLNAIRETARLEAIRDEHKLILEDLASTARDYGGVTTAPYHIGGSDGVATTSTSEEDADGEFDEDGLTFAKRYLQELGQDVGPGKLVAFITPRAFESLATSSSISEYAQIGNPSVTKLGQLERLYGIDLVVTNEVKGDVSNADRNIVAVKGAAWGLASQRTMELELQKQVAGQYWDLVWTHRIGVNVIDPNTYIIVSSVNS* |
| Ga0005276J37295_1008329 | Ga0005276J37295_10083291 | F000155 | SLQMKFALAIATVAANQYDFMSEDELLSQLASNLSSAQMSEARGDGDAAVAKTAAIKNIQKSLTARILKRLDDGQPLVEVARKMKAIEGMQP* |
| Ga0005276J37295_1009227 | Ga0005276J37295_10092271 | F077350 | EVAVTDSALANQIQKTEVDPKQPDIQKLLEELEGKLRGALNVLKPSVNSMCDNLRQAAADIRKDKDATMLWTTLNDMQVFLSLVQQICSSVGTQGPKVVAFDNALGDALGTLETVVVDSESPDEVAAFIESTLIVALGKWDAAEDELRDIAKV* |
| Ga0005276J37295_1010630 | Ga0005276J37295_10106301 | F015413 | SLLATPQFEQPQFEQLIPKGILGKDMLIGSAGTALSVQVGNIVGKFLPLGQLPVGTSSILAGILLQKFGGSNSMLKKLSEGIIQGGIATAMTPFTSGLIPNFNQEVKEVAQELNPLVKGVMW* |
| Ga0005276J37295_1022035 | Ga0005276J37295_10220351 | F020371 | DVKAGGRQRMAALRSNTNSAVDIVNVWETVLGKQDRTYAGKNLAKEIAVPNLLISIDTATKFSGMTQLDEGQLSQLKELTYTRQNFEASKYGLKFVIHEEARLKNVHNVLQDSIQVASNKVEQRQSFDVVSLADSSLTAKAAAGAWDTFVSSTDRSTANPLLDLGTSQLLIEGSGVGGKLNRIGMHPLDFAKYMGNTFIRGVASTSPSEVSFEPGTRELPGFPGAGLVLDNAIRQGDVYCVDTEKEPTIASSKAHNALEVHMTKRQETINTLSST |
| Ga0005276J37295_1051275 | Ga0005276J37295_10512751 | F046996 | NLRKLHSNGVTITLTLGSWCTELPISTKDEWTDAQFGEFVTYFEDVRQNVFGGYLDGIDFDWEGYCSAGCLKGTCECDWDDKICGEASPSELAAGIFWETSPAPGEPKLKKQCWIMPTSSTFQVMTGITNAMKKKNYVVTLVPMSTSLYSGEPEVMASPVLRNEYGKYAKHTFAGEQVDLLELSDGILLQWYSGFDATLCHNSGDPMACACNNVPDADYPNVLDSDKDVGGLLMASWQTYWNIS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |