NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300002780

3300002780: Piglet fecal microbial communities from UC Davis, California, USA, of a weaning piglet - sample 1



Overview

Basic Information
IMG/M Taxon OID3300002780 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0111377 | Gp0091640 | Ga0048151
Sample NamePiglet fecal microbial communities from UC Davis, California, USA, of a weaning piglet - sample 1
Sequencing StatusPermanent Draft
Sequencing Center
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size281284854
Sequencing Scaffolds2
Novel Protein Genes2
Associated Families2

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NamePiglet Fecal Microbial Communities From Uc Davis, California, Usa, Of A Weaning Piglet
TypeHost-Associated
TaxonomyHost-Associated → Mammals → Digestive System → Large Intestine → Fecal → Piglet Fecal → Piglet Fecal Microbial Communities From Uc Davis, California, Usa, Of A Weaning Piglet

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationUniversity of California, Davis, USA
CoordinatesLat. (o)38.53Long. (o)-121.76Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F099269Metagenome103N
F099451Metagenome103N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
s1d14p1_10226845All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales3359Open in IMG/M
s1d14p1_10937184All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella621Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
s1d14p1_10226845s1d14p1_102268456F099451MEIKNVGQLRKIIENLSDDYEIEMRVRRKLSDEELKECRYPYPYDTEYLTLEFDDIGVSDKVLCLGVTSKIN*
s1d14p1_10937184s1d14p1_109371841F099269VSVQVGELLLLDDLGDRAGGASVLASATGDAGVLVSNGSDVLELQNASGAGVDANATSDALVGINYGMSHGSFLSVDRRYRRCAPV*

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