Sample 3300002833

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300002833

3300002833: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G07A5-10

Overview

Basic Information
IMG/M Taxon OID	3300002833 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0095510 \| Gp0072045 \| Ga0007170
Sample Name	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G07A5-10
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	3147335
Sequencing Scaffolds	1
Novel Protein Genes	2
Associated Families	2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → agricultural field → agricultural soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Wisconsin, United States
Coordinates	Lat. (^o)	43.3	Long. (^o)	-89.38	Alt. (m)	N/A	Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F023931	Metagenome	208	Y
F033457	Metagenome / Metatranscriptome	177	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
JGI25429J40557_100280	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	562	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI25429J40557_100121	JGI25429J40557_1001212	F023931	MNEAQTLSYTRAQTATRLRIYQVLFAISIIAGLLAGLWCIFDPVGFAQLVFQIDPYPQTWPRIWGATLFGLQLAYIPGVRNPSFYRWPNWASIAIKFLMTIIFLTAGSSFYLLAAWELVWFVILLVAYYRLMLAGIHGDP*
JGI25429J40557_100280	JGI25429J40557_1002801	F033457	MRNIVSYIPAGALVVLLLDVIAPPAGLGFRAAAWPSVERQGLAPQIVDRTHKSDRLPVPKASGRRLTPPVPVLVGCDPVF

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