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Sample 3300002860
3300002860: Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - Graham LP Incubations RNA 1 (Metagenome Metatranscriptome)
Overview
| Basic Information |
| IMG/M Taxon OID | 3300002860 Open in IMG/M |
GOLD Reference
(Study | Sequencing Project | Analysis Project) | Gs0084162 | Gp0055561 | Ga0004694 |
| Sample Name | Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - Graham LP Incubations RNA 1 (Metagenome Metatranscriptome) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents |
| Total Genome Size | 743121 |
| Sequencing Scaffolds | 6 |
| Novel Protein Genes | 6 |
| Associated Families | 5 |
| Dataset Phylogeny |
| Taxonomy Groups | Number of Scaffolds |
|---|
| Not Available | 5 |
| All Organisms → cellular organisms → Eukaryota | 1 |
Ecosystem and Geography
| Ecosystem Assignment (GOLD) |
| Name | Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa |
| Alternative Ecosystem Assignments |
| Environment Ontology (ENVO) | polar biome → polar → peat soil |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information |
| Location | Barrow Environmental Observatory site, Alaska, USA |
| Coordinates | Lat. (o) | 71.2999 | Long. (o) | -156.61 | Alt. (m) | N/A | Depth (m) | N/A |
Location on Map |
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Associated Families
| Family | Category | Number of Sequences | 3D Structure? |
|---|
| F000817 | Metagenome / Metatranscriptome | 879 | Y |
| F007695 | Metagenome / Metatranscriptome | 346 | Y |
| F013836 | Metagenome / Metatranscriptome | 268 | Y |
| F046210 | Metagenome / Metatranscriptome | 151 | N |
| F105212 | Metagenome / Metatranscriptome | 100 | Y |
