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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300002938 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0085494 | Gp0095984 | Ga0052929 |
| Sample Name | Larval gut metagenome for colony PL005 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Harvard University |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 2406109 |
| Sequencing Scaffolds | 0 |
| Novel Protein Genes | 4 |
| Associated Families | 1 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal proximal gut |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Big Pine Key, Florida | |||||||
| Coordinates | Lat. (o) | 40.81667 | Long. (o) | -81.3617833 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F054614 | Metagenome / Metatranscriptome | 139 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| CVPL005L_10013501 | CVPL005L_100135016 | F054614 | MLLTLFTLTGKNSILAVSYFSAVDLSNDDYELGLTDFETYYTIPNVNLSNNKFYFDKDNKGIVISEGSYKLHDIDKYLKRAISNNIM* |
| CVPL005L_10016778 | CVPL005L_100167785 | F054614 | MSLTFTLTGKSSILAVSYFPAVDLSDDDYELGLTDFETYTIPNVNSSNNKFYFDKDDKEIVIPVGSYELHKI* |
| CVPL005L_10041333 | CVPL005L_100413332 | F054614 | MSLILTLTGKSNVLATTYFPAIDLSDDDYELGLMNFETYDNTISNVNASNSKFYFGENDVEITIPEGSYELHAINDFF* |
| CVPL005L_10042933 | CVPL005L_100429332 | F054614 | MSLILTLTGKSNVLATTYFPAIDLSDDDYELGLMNFETYNTLSNVNASNNKFYFDENDMEITIPEGSYELHAINDFLKHAIPRKRSQHAVH |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |