NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300002948

3300002948: High solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-2-D



Overview

Basic Information
IMG/M Taxon OID3300002948 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0110114 | Gp0088362 | Ga0008103
Sample NameHigh solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-2-D
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size70944855
Sequencing Scaffolds10
Novel Protein Genes14
Associated Families2

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available10

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameIonic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa
TypeEngineered
TaxonomyEngineered → Lab Enrichment → Defined Media → Unclassified → Unclassified → Ionic Liquid And High Solid Enriched → Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationJoint BioEnergy Institute, California, USA
CoordinatesLat. (o)38.5402Long. (o)-121.75Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010514Metagenome302Y
F038929Metagenome / Metatranscriptome164Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
JGI26050J44790_1007962Not Available1190Open in IMG/M
JGI26050J44790_1010782Not Available921Open in IMG/M
JGI26050J44790_1012782Not Available806Open in IMG/M
JGI26050J44790_1015627Not Available699Open in IMG/M
JGI26050J44790_1019275Not Available601Open in IMG/M
JGI26050J44790_1020520Not Available575Open in IMG/M
JGI26050J44790_1021042Not Available566Open in IMG/M
JGI26050J44790_1023170Not Available530Open in IMG/M
JGI26050J44790_1024186Not Available515Open in IMG/M
JGI26050J44790_1025356Not Available500Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
JGI26050J44790_1007962JGI26050J44790_10079621F038929MENKKNLFPTRPNPTRVTEFKNKCKKILKIKKYHPGFISIRNGPGQAEK*
JGI26050J44790_1007962JGI26050J44790_10079622F038929MKRVRSGRKIENKKNFIPIRSNPTRVRKFKNKYKKILKIKKHHPGLISRRNGSGEAEK*
JGI26050J44790_1010782JGI26050J44790_10107821F038929VKTGRKIETKKNFLPISSITTRVREFKNKCKKIRKIKKQHPGFILRRNGSGQAEK*
JGI26050J44790_1012782JGI26050J44790_10127821F038929MGRKIENKNNFFPIRSNQTRVRKLKNKCKKILKIKKRHPGFISRRNGLGQAEK*
JGI26050J44790_1015627JGI26050J44790_10156271F010514KKILVPNSVHTRLGQENSEKYSKKIQKIIKPLPGIISNQNGMR*
JGI26050J44790_1016669JGI26050J44790_10166691F010514MKKKNLVPNSVHIGPGKENSEKNRNEIQKIRKSLSGINFSQNGMR*
JGI26050J44790_1019275JGI26050J44790_10192751F010514VKKNLVPNSVHTRLGQENSEKNSNKIQKIXKPXPGIIFSXNGMX*
JGI26050J44790_1020520JGI26050J44790_10205201F010514MGRKKENKILVPNSVHARHGQENSEKNSKKMQKFIKHLPGIIFSQNGTR*
JGI26050J44790_1021042JGI26050J44790_10210421F010514RENEILVPNSVHT*HGQENSKKNSKKIQKIIKPPPGIIFSRNRMR*
JGI26050J44790_1021436JGI26050J44790_10214361F038929MKRVKTDRKTENKKYFFPLRSNPTRVRKFKNECKKVLKIKKHHPGFISGKNGSGQAEK*
JGI26050J44790_1021725JGI26050J44790_10217251F010514KRDEIGRKRVKKILVPNSVHTRPGKENSEKNCKKIQKIIKPLPSIIFSQNGMR*
JGI26050J44790_1023170JGI26050J44790_10231701F038929MKRVRTGRKIGNEKNFIPIRSNPTRVRKLKNKRKKILKIKKHHPGFISRRNVSG*
JGI26050J44790_1024186JGI26050J44790_10241861F038929MQKNFKNYKTSSRLHLNTKRVRAGGKIENKKNFIPIRSNPTRVRKFKNECKKILKIKK
JGI26050J44790_1025356JGI26050J44790_10253563F038929VRTGCKIENKNNFIPNRSNLTRVRKLKNKCQKSLKIKKHHPGFISI*
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