NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300002949

3300002949: High solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-3-D



Overview

Basic Information
IMG/M Taxon OID3300002949 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0110114 | Gp0088363 | Ga0008104
Sample NameHigh solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-3-D
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size100370668
Sequencing Scaffolds16
Novel Protein Genes19
Associated Families2

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available16

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameIonic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa
TypeEngineered
TaxonomyEngineered → Lab Enrichment → Defined Media → Unclassified → Unclassified → Ionic Liquid And High Solid Enriched → Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationJoint BioEnergy Institute, California, USA
CoordinatesLat. (o)38.5402Long. (o)-121.75Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010514Metagenome302Y
F038929Metagenome / Metatranscriptome164Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
JGI26051J44788_1007909Not Available1413Open in IMG/M
JGI26051J44788_1008905Not Available1278Open in IMG/M
JGI26051J44788_1010595Not Available1097Open in IMG/M
JGI26051J44788_1012697Not Available940Open in IMG/M
JGI26051J44788_1014568Not Available844Open in IMG/M
JGI26051J44788_1019484Not Available690Open in IMG/M
JGI26051J44788_1020273Not Available672Open in IMG/M
JGI26051J44788_1021287Not Available651Open in IMG/M
JGI26051J44788_1022485Not Available628Open in IMG/M
JGI26051J44788_1023245Not Available615Open in IMG/M
JGI26051J44788_1024313Not Available598Open in IMG/M
JGI26051J44788_1024997Not Available588Open in IMG/M
JGI26051J44788_1025404Not Available582Open in IMG/M
JGI26051J44788_1027465Not Available555Open in IMG/M
JGI26051J44788_1029771Not Available528Open in IMG/M
JGI26051J44788_1030634Not Available519Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
JGI26051J44788_1007909JGI26051J44788_10079092F038929MKRVRTGSKMENKNNFIPNRSNPTRVRKFKNKCKKILKIKKHH
JGI26051J44788_1008905JGI26051J44788_10089051F010514GRKSEYKILVPNSVHTRPEQENSEKNRKKIQKIVKPLPDIIFSQNGMR*
JGI26051J44788_1009334JGI26051J44788_10093343F038929MTGRKIETKKNFLPISSITTRVRELKNKCKKIRKIKKQHPGFILRRNGSGQA
JGI26051J44788_1010595JGI26051J44788_10105951F010514LFLAKTDEIGRKSENKILVPNSXHTRPGQENSEKNSKKIQXXIKPIPGIIFSQNGKI*
JGI26051J44788_1012697JGI26051J44788_10126971F010514KILVPNSVHTLPGQENSEKNNKKIQKILKPLLGNIFSQNGMR*
JGI26051J44788_1014403JGI26051J44788_10144031F038929GRKIENQKNFPPIRSNPTRVRKFKNKRKKILKIKQRHPGFISTQNGSRQVEK*
JGI26051J44788_1014568JGI26051J44788_10145681F010514VKKILVPNSVHTRLGQENSEKNSNKIQKIIKPLPGIIFSQNGMR*
JGI26051J44788_1019484JGI26051J44788_10194841F010514LVPNSVHTRPGQENSEKYSKKIQIFIKPLFGIIFSKNGMR*
JGI26051J44788_1020273JGI26051J44788_10202732F010514ITGREGQKSENKILPQNSVHTRPEQENSEKNSKKIQKIIKPIAGIIFSENRMR*
JGI26051J44788_1021287JGI26051J44788_10212871F010514PALFLAKTDEIGEKSENKILVPNSVHTRPGQEIFEKNSKKVQKIKKPIHGIIFSPNGKI*
JGI26051J44788_1022485JGI26051J44788_10224851F010514DEIGQKRENKIFVPNSVQTRPKQDNSKKNSKKIQKIIKRPPGIISSQNGMG*
JGI26051J44788_1022793JGI26051J44788_10227931F010514RDEIG*KSENEILLPNSVHTRPGQENSEKNSKKIQKIIKPLTGIIFCQNGTRKAEKEKTKF*
JGI26051J44788_1023245JGI26051J44788_10232451F010514PKNDEIGRKSENEILLQNSVHTRLGQENSEKNSEKIQKIVKPLPDIIFSQYGMS*
JGI26051J44788_1024313JGI26051J44788_10243131F010514IGRKSKNKILLQNSVRNRPGQENSEKNSKKIQKIIKPLPGIIFSQKGMR*
JGI26051J44788_1024997JGI26051J44788_10249971F010514KLVPNSVLTRPGQENSEKNCKKIQKIIKPLPGIIFSQNGKI*
JGI26051J44788_1025404JGI26051J44788_10254041F010514VPNSVHTRLGQENSEKYSKKIQKIIKPLPGIISNQNGMR*
JGI26051J44788_1027465JGI26051J44788_10274653F038929GVHFKMKRVRTGQKIEIKKNFIPIRSNPTRVRKIKNKCKKI*
JGI26051J44788_1029771JGI26051J44788_10297711F038929MTIRVRKGRKIENKKKFIPIRSNPTRIRKFKNKCKKILKITKHHPGFISRRNGSGQAE
JGI26051J44788_1030634JGI26051J44788_10306341F010514IGRKRVKKILVPNSVHTRLGQENSEKNSNKIQKIIKPLPGIIFSQNGMR*
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