NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300002950

3300002950: High solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-5-D



Overview

Basic Information
IMG/M Taxon OID3300002950 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0110114 | Gp0088365 | Ga0008106
Sample NameHigh solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-5-D
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size65026790
Sequencing Scaffolds13
Novel Protein Genes18
Associated Families2

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available13

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameIonic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa
TypeEngineered
TaxonomyEngineered → Lab Enrichment → Defined Media → Unclassified → Unclassified → Ionic Liquid And High Solid Enriched → Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationJoint BioEnergy Institute, California, USA
CoordinatesLat. (o)38.5402Long. (o)-121.75Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010514Metagenome302Y
F038929Metagenome / Metatranscriptome164Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
JGI26053J44789_1006001Not Available1401Open in IMG/M
JGI26053J44789_1006541Not Available1327Open in IMG/M
JGI26053J44789_1006761Not Available1299Open in IMG/M
JGI26053J44789_1009901Not Available1019Open in IMG/M
JGI26053J44789_1018190Not Available699Open in IMG/M
JGI26053J44789_1019213Not Available676Open in IMG/M
JGI26053J44789_1019552Not Available669Open in IMG/M
JGI26053J44789_1020570Not Available649Open in IMG/M
JGI26053J44789_1022101Not Available621Open in IMG/M
JGI26053J44789_1023571Not Available599Open in IMG/M
JGI26053J44789_1026220Not Available561Open in IMG/M
JGI26053J44789_1027421Not Available546Open in IMG/M
JGI26053J44789_1031328Not Available504Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
JGI26053J44789_1002492JGI26053J44789_10024921F010514KKKILVPNSVHTRPGQENSEKNSKKIQKINKPLFGINFSQNGMR*
JGI26053J44789_1006001JGI26053J44789_10060012F038929ARIGRKIENKNNFLPTRSNPARVRKFENKCKKNLKIKKHHPGFISRRNGSG*
JGI26053J44789_1006541JGI26053J44789_10065411F010514ENKILVPNSVHTRPGQENSEKNSKKIQKIIKPLPGFIFSQNGMR*
JGI26053J44789_1006761JGI26053J44789_10067611F010514KSENKILPQNSVHTRPEQENSEKNSKKIQKIIKPIAGIIFSENRMR*
JGI26053J44789_1009901JGI26053J44789_10099011F010514KSENKILLQNSVHTRTGQENSENNNKKIQKIIKPLPGIIFRQNEIV*
JGI26053J44789_1010733JGI26053J44789_10107331F038929ENKKNLFPIRSNPTRVREFKNKCKKILKIKKHHPGFISRRKGSGQTEK*
JGI26053J44789_1016037JGI26053J44789_10160372F038929IEKIKNFIPIGSNPTRVRKFKNECKKTLKIKKHHPGYISRRNGSGQAEK*
JGI26053J44789_1016710JGI26053J44789_10167101F038929GQKIEYKKNFFPIHSNPTRVREFKNKCKKILKKKKHHAGFISRRNGSGQVDK*
JGI26053J44789_1018190JGI26053J44789_10181901F010514KTSFWHYFYPKRDEMGRKKENKILVPNSVHTRHGQENSEKNSKKIQKIIKPLPDIIFSKNGMR*
JGI26053J44789_1019213JGI26053J44789_10192132F010514PKRDETGRKSENKVLVPNSILTRPGQENSEKNGKKIQKIIKPLPSNISGQKGMI*
JGI26053J44789_1019552JGI26053J44789_10195521F010514KKIIVPNSVHIRPGQENSEKYSKKIQKIIKPLPSIIFSQNGMR*
JGI26053J44789_1020570JGI26053J44789_10205701F010514EEISRKSEIKILLQNSVHTRPGQENSEKNSTKFQKIITPLPSIFSRQNGMR*
JGI26053J44789_1022101JGI26053J44789_10221011F010514RDEICRKRENKILVPNSVHTRPGPENSEKNSKKVQKIIKRLPGIIFRQNGMR*
JGI26053J44789_1023571JGI26053J44789_10235712F010514MGRKKENKILVPNFVYTRHGQENSEKNSKMIQKIIKPLPDIIFSKNGMR*
JGI26053J44789_1026220JGI26053J44789_10262203F038929MTIRVRKGRKIENKKKFIPIRSNPTRIRKFKNKCKKILKITKHHPGFISRRNG
JGI26053J44789_1027421JGI26053J44789_10274211F010514KILVPNSIRTRLGQENSEKNSKKIQKIIQPLPGIISSQNGMR*
JGI26053J44789_1030914JGI26053J44789_10309141F038929DQERPKIENQNNFLPIRSNKTQVRKFKNKCKKILKIKKHLPGFISRRNGSGPAEI*
JGI26053J44789_1031328JGI26053J44789_10313281F010514MGRKRENKILVPNSVHTRPGKENSEKNSKKIQKIIKPLSGIIFIQNGMRWAEKKKKKI*
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