NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300002951

3300002951: High solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-4-D



Overview

Basic Information
IMG/M Taxon OID3300002951 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0110114 | Gp0088364 | Ga0008105
Sample NameHigh solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-4-D
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size72568484
Sequencing Scaffolds20
Novel Protein Genes22
Associated Families2

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available20

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameIonic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa
TypeEngineered
TaxonomyEngineered → Lab Enrichment → Defined Media → Unclassified → Unclassified → Ionic Liquid And High Solid Enriched → Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationJoint BioEnergy Institute, California, USA
CoordinatesLat. (o)38.5402Long. (o)-121.75Alt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010514Metagenome302Y
F038929Metagenome / Metatranscriptome164Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
JGI26052J44787_1008137Not Available1278Open in IMG/M
JGI26052J44787_1009850Not Available1122Open in IMG/M
JGI26052J44787_1010933Not Available1045Open in IMG/M
JGI26052J44787_1011271Not Available1023Open in IMG/M
JGI26052J44787_1012148Not Available970Open in IMG/M
JGI26052J44787_1012170Not Available969Open in IMG/M
JGI26052J44787_1014038Not Available881Open in IMG/M
JGI26052J44787_1015014Not Available842Open in IMG/M
JGI26052J44787_1017887Not Available752Open in IMG/M
JGI26052J44787_1018493Not Available736Open in IMG/M
JGI26052J44787_1019923Not Available703Open in IMG/M
JGI26052J44787_1021837Not Available664Open in IMG/M
JGI26052J44787_1022648Not Available650Open in IMG/M
JGI26052J44787_1022729Not Available648Open in IMG/M
JGI26052J44787_1024959Not Available612Open in IMG/M
JGI26052J44787_1028356Not Available567Open in IMG/M
JGI26052J44787_1029860Not Available550Open in IMG/M
JGI26052J44787_1031940Not Available529Open in IMG/M
JGI26052J44787_1032423Not Available525Open in IMG/M
JGI26052J44787_1032603Not Available523Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
JGI26052J44787_1008137JGI26052J44787_10081371F038929VKTGRKIENKKNFLPIRLNPTRVRKFKYKCKKILKIKNHHPGIISGRNGXRQAEK*
JGI26052J44787_1009850JGI26052J44787_10098501F010514EIGRKSENKILVPNSVHTRPGQENSEKNSKKIQKIIKPIPGIIFSQNGKI*
JGI26052J44787_1010933JGI26052J44787_10109331F010514EIGRKSENKILVPNSVQTRPGQENSEKNSKKIQKIIKPIPGIIFSQNGKI*
JGI26052J44787_1011271JGI26052J44787_10112711F038929VKTGREIENKNNLLPIRSNKTRVRKFKNKCKEILKIKKHHPGFISRRNGSGQA
JGI26052J44787_1011271JGI26052J44787_10112713F038929RKIENKNNFLPNRSNPTRVRKFKNKCKKILKIKKHLQGFISRRNGSGQTEK*
JGI26052J44787_1012148JGI26052J44787_10121483F010514KILLQNSVHTRPGQENSEKNSKKIQKIIKPLPGITFSQNGTR*
JGI26052J44787_1012170JGI26052J44787_10121701F010514GRKSEYEILVPNSVHTRPGQENSEKNSKKFQKIIKPLPVIIFSQNRMR*
JGI26052J44787_1014038JGI26052J44787_10140381F038929RLHFMKKLVRTGRKIENNKNFIPIRTNPSPVRKFKNKCKKIIKIKKHHPGYISRRNGSGQAKE*
JGI26052J44787_1015014JGI26052J44787_10150141F038929IGQKIEKKNNFLPIRSNPARVRKFKNKCKKILKIKKHHPGFISRRNGSGQA*
JGI26052J44787_1017887JGI26052J44787_10178871F010514DEISRKSEIKIILQNSVHSRPLQENSEKNINKIQKIIKPIPGIFF*
JGI26052J44787_1018493JGI26052J44787_10184931F010514RENKILFPNSVHSRPGQENSEKNSKKIQKIIKPIPGIISS*
JGI26052J44787_1019923JGI26052J44787_10199231F010514MKILVPNSDLTRPGQENYEKNCKKIQKIIKPLPGIIFXQNGKX*
JGI26052J44787_1021837JGI26052J44787_10218371F038929MKRVRIGRKIEKKKNFIPIRSNRTRVKIFKNKCKKILKIKKHHPGF
JGI26052J44787_1022648JGI26052J44787_10226481F038929KIENKKNFLRIRSNPARVRKFENKCKKILKIKKHHPGII*
JGI26052J44787_1022729JGI26052J44787_10227291F038929MKRVKTGQKIEKKKIFIPIRSNPTRVKKFKNKCKKILIIK
JGI26052J44787_1023421JGI26052J44787_10234211F010514SRKYFQPKRDEIGPKRENKILVPNSVHTRPGRENSKKNCKKIQKIRKLLPGIISSKNGMI
JGI26052J44787_1024959JGI26052J44787_10249591F010514KRDEIGRQSDHKILVPNSVHTRPGKQNSEKNSKKIQKIIKPLPDIIFSQNGTR*
JGI26052J44787_1028356JGI26052J44787_10283561F010514KRDEIGRKSENKILLQNSVHTRPGQKNSEKNSKKIQKIIKPLPGIIFRENGTR*
JGI26052J44787_1029860JGI26052J44787_10298601F010514EIGRKRENKILVPNSIHTRPGKENFEKNCKIIQKIIKPIPGIISS*
JGI26052J44787_1031940JGI26052J44787_10319401F010514MRLGRQSEHKILVPNSVHTRPGKQNSEKNSTKVQKIIKPLPGNIFSQNGTRLADKVNTKF
JGI26052J44787_1032423JGI26052J44787_10324231F010514PKRDEINRKSENKILVPNSVLTRPGQENSEKNSKKIQKNIKPLPGIISSQNGME*
JGI26052J44787_1032603JGI26052J44787_10326031F010514RKSEIKILVPNSVHTRPGQENSEKHSTKIQKILKPLLGIIFSQNGMR*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.