NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300002952

3300002952: High solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-7-D



Overview

Basic Information
IMG/M Taxon OID3300002952 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0110114 | Gp0088367 | Ga0008108
Sample NameHigh solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-7-D
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size126670649
Sequencing Scaffolds18
Novel Protein Genes21
Associated Families2

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available18

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameIonic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa
TypeEngineered
TaxonomyEngineered → Lab Enrichment → Defined Media → Unclassified → Unclassified → Ionic Liquid And High Solid Enriched → Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationJoint BioEnergy Institute, California, USA
CoordinatesLat. (o)38.5402Long. (o)-121.75Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010514Metagenome302Y
F038929Metagenome / Metatranscriptome164Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
JGI26055J44792_1014687Not Available1433Open in IMG/M
JGI26055J44792_1018143Not Available1179Open in IMG/M
JGI26055J44792_1020301Not Available1064Open in IMG/M
JGI26055J44792_1021367Not Available1018Open in IMG/M
JGI26055J44792_1023357Not Available943Open in IMG/M
JGI26055J44792_1030909Not Available749Open in IMG/M
JGI26055J44792_1032297Not Available724Open in IMG/M
JGI26055J44792_1033604Not Available701Open in IMG/M
JGI26055J44792_1039833Not Available617Open in IMG/M
JGI26055J44792_1041456Not Available599Open in IMG/M
JGI26055J44792_1042129Not Available592Open in IMG/M
JGI26055J44792_1044220Not Available572Open in IMG/M
JGI26055J44792_1045017Not Available565Open in IMG/M
JGI26055J44792_1045727Not Available559Open in IMG/M
JGI26055J44792_1048818Not Available533Open in IMG/M
JGI26055J44792_1049361Not Available529Open in IMG/M
JGI26055J44792_1052362Not Available508Open in IMG/M
JGI26055J44792_1053011Not Available504Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
JGI26055J44792_1009472JGI26055J44792_10094721F010514LVPNSVHTRPGQENSEKNSKKIQKINKPLSGINFSQNGMR*
JGI26055J44792_1014687JGI26055J44792_10146871F010514EIGRKCENKILVLNSVHPRPGQENSEKNSKKIQKIIKPLPGIIFSQNGMR*
JGI26055J44792_1018143JGI26055J44792_10181431F010514LAKTDEIGQKSENKILVPNSVHTRPAQENSEKIIKPLPGIISSQNGVI*
JGI26055J44792_1020301JGI26055J44792_10203011F010514LVPTSVHTRPGQENSEKNSKKIQKIIKPLPGFIFSQNGRR*
JGI26055J44792_1021367JGI26055J44792_10213671F010514LPKLDEIGQKREKKILVPNSILTRPGQENSEKNSKKIQKIIKPLPRIIFSQNGMQKAKNVKTKF*
JGI26055J44792_1021619JGI26055J44792_10216191F038929MKRVKTDRKTENKKYFFPLRSNPTRVRKFKNECKKVLKIKKHHPGFISG
JGI26055J44792_1023357JGI26055J44792_10233571F038929MKRVRIGRKIEKKKNFIPIRLNXSRVTKFKNEGKKILKIKKHHPGFISRRNGSGQAEE*
JGI26055J44792_1030909JGI26055J44792_10309092F038929KRVRIGRKIEKKKNFIPIRSNPTRVRKFKNKCKNILKIKKHHPGFISRRNRSRQAAK*
JGI26055J44792_1032297JGI26055J44792_10322971F010514VPNSVHTRLGQENSEKYSKKIQKIIKPLPGIISNQNGXR*
JGI26055J44792_1032420JGI26055J44792_10324201F038929QKIENKKNFIPIRSNPTRVRKFKNKCKKILKIKKQHPGFISRRNGSGQAEK*
JGI26055J44792_1033604JGI26055J44792_10336041F038929MTIRARIGRKIENKNNFLPIRSNPARVRKFENKCKKILKIKKHHPGFISRRNGSGQTEKLITK
JGI26055J44792_1039833JGI26055J44792_10398331F010514SENEILHQNLVHTRPGQKNSEKNSKKIQKYIKPLPSIIFSQNRTR*
JGI26055J44792_1041456JGI26055J44792_10414561F010514KRDEIGRKSEIKILVPNSVHTRPGQENSEKHSTKIQKILKPLLGIIFSQNGMR*
JGI26055J44792_1042129JGI26055J44792_10421291F010514MGRKKENKILVPNSVHTRHGQENSEKNSKKIQKIIKPLPTLFLAKTG*
JGI26055J44792_1044220JGI26055J44792_10442201F010514YFYTKRDQMGRKKENKILVPNSVHTRHGQENSEKNSKKIHKMIKPLPDIIFSQNGMR*
JGI26055J44792_1045017JGI26055J44792_10450171F010514SENKILVPNSVLTRPRQENSKKNSIKIIKPHPIIISSQKGMR*
JGI26055J44792_1045727JGI26055J44792_10457271F010514MGQKSENKILVPNSVHTRPERENSEKNSKKIQKIIKPLPGIIFSQNGMR*
JGI26055J44792_1048818JGI26055J44792_10488181F010514KRDGINRKSENKILVPNSVLTRPGQENSEKNSKKIQKNIKPLPGIISSQNGME*
JGI26055J44792_1049361JGI26055J44792_10493611F038929RKIEKKKNFILIRSNPIRVKKFKNKCIKILKIKNHYPGFISRRNGSGHAAK*
JGI26055J44792_1052362JGI26055J44792_10523621F038929NRKRFRTDRKIEMKKNFIPIRTNPTRVRKFKNECKKILKIKKHHPGFISI*
JGI26055J44792_1053011JGI26055J44792_10530111F038929GRKIEKKKNFIPIRSNTTRVIKFKNKCKKILKIKKDHPGFIST*
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