NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300002953

3300002953: High solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-9-D



Overview

Basic Information
IMG/M Taxon OID3300002953 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0110114 | Gp0088369 | Ga0008110
Sample NameHigh solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-9-D
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size130944632
Sequencing Scaffolds14
Novel Protein Genes18
Associated Families2

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available14

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameIonic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa
TypeEngineered
TaxonomyEngineered → Lab Enrichment → Defined Media → Unclassified → Unclassified → Ionic Liquid And High Solid Enriched → Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationJoint BioEnergy Institute, California, USA
CoordinatesLat. (o)38.5402Long. (o)-121.75Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010514Metagenome302Y
F038929Metagenome / Metatranscriptome164Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
JGI26057J44791_1020013Not Available945Open in IMG/M
JGI26057J44791_1020504Not Available931Open in IMG/M
JGI26057J44791_1021180Not Available912Open in IMG/M
JGI26057J44791_1021616Not Available901Open in IMG/M
JGI26057J44791_1022001Not Available892Open in IMG/M
JGI26057J44791_1024518Not Available834Open in IMG/M
JGI26057J44791_1031963Not Available713Open in IMG/M
JGI26057J44791_1034022Not Available687Open in IMG/M
JGI26057J44791_1034782Not Available678Open in IMG/M
JGI26057J44791_1043699Not Available596Open in IMG/M
JGI26057J44791_1048047Not Available565Open in IMG/M
JGI26057J44791_1051521Not Available543Open in IMG/M
JGI26057J44791_1055101Not Available523Open in IMG/M
JGI26057J44791_1059228Not Available502Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
JGI26057J44791_1020013JGI26057J44791_10200132F038929VKTGRKIENKKNLFPTRPNPTRVTEFKNKCKKILKIKKYHPGFISIRNGPGQAEK*
JGI26057J44791_1020455JGI26057J44791_10204551F010514VPNSVHTRPGQENSEKYSKKIQKIIKPLFGISFTKNGMR*
JGI26057J44791_1020504JGI26057J44791_10205041F038929VRTGQKIENKKNFFPIRSNSTRVKKFKNKCKNFFKIKKKHHPGFISRRNGSGQAEK*
JGI26057J44791_1021180JGI26057J44791_10211801F010514SENEILPKRDEIGRKSENEILXQNLVHTRPGQKNSEKNSKKIQKYIKPLPSIIFSQNRTR
JGI26057J44791_1021616JGI26057J44791_10216161F038929VKTGRKIENKNNFLPNRSNPTRVRKFKNKCKKILKIKKHHPGFISRRNGSGQAEK
JGI26057J44791_1022001JGI26057J44791_10220011F038929MKQVRIGQKIQKKKIFIPIRSNPTRVKKFKNKCKKILKIKKYHPGFISRRNGSGQAAK*
JGI26057J44791_1024518JGI26057J44791_10245181F010514ILVPNSIRTRLGQENSEKNSKKIQKIIKPLSGIIFSQNGMR*
JGI26057J44791_1025468JGI26057J44791_10254681F038929KIENKKNIIPIRSNPTRVRKFKNKCKKNLKIKKYHAGFISRRNGSLQVKK*
JGI26057J44791_1031963JGI26057J44791_10319631F038929MKRVKTGRKIENKKNFLRIRSNPTRVREFKNKCKKILQIKKHHPDFISRRNGPGQAEKK
JGI26057J44791_1034022JGI26057J44791_10340221F010514MKILVPNSILTRPGQENSEKNSKKIQKNIKPLPGNISSQNGKI*
JGI26057J44791_1034782JGI26057J44791_10347821F038929MQKNFKNYKTSSRLHLNTKRVRAGGKIENKKNFLPIRSNPTRVRKFKNECKKILKIKKHHPGFLSR*
JGI26057J44791_1035325JGI26057J44791_10353251F038929KIENKKNFIPIRSNPTRVRKFKNKCKKILKITKYHPGFISRRNGSGQAEK*
JGI26057J44791_1037185JGI26057J44791_10371851F038929KIENKKNFFPISSNPTRVRKLKNKSKKILKIKKHHPGFILRRNGSGQAKK*
JGI26057J44791_1043699JGI26057J44791_10436991F038929MMLRLRKGRKIENKKNFIPIRSNPTRVRKFKNKCKKILKITKHHPGFISRRNGSGQA
JGI26057J44791_1048047JGI26057J44791_10480471F010514ILVPNSVHTRPGQENSKRNSKKIKKKPLSGIIFSQNGMR*
JGI26057J44791_1051521JGI26057J44791_10515211F010514NKILFPNFVHTRPGQENSEKNCKKIQKIIKPLPGIIFSQNGMR*
JGI26057J44791_1055101JGI26057J44791_10551011F038929MMIRFRKGRKRENKKNFIPIRSNPTRVRKFKNKCIKILKITKYHPGFISIRNELGQAEK*
JGI26057J44791_1059228JGI26057J44791_10592281F038929TKRVRTGRKIENKKYFIPIRSNPTSVRKFKNECEKILKIKKHHPGFISR*
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