NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300002988

3300002988: Fe-reducing enrichment culture from wetland sample 1



Overview

Basic Information
IMG/M Taxon OID3300002988 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0111407 | Gp0099082 | Ga0054507
Sample NameFe-reducing enrichment culture from wetland sample 1
Sequencing StatusPermanent Draft
Sequencing Center
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size511934306
Sequencing Scaffolds33
Novel Protein Genes34
Associated Families29

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geobacter4
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria3
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium2
All Organisms → cellular organisms → Bacteria → Terrabacteria group1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium atlanticum1
All Organisms → cellular organisms → Bacteria5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → Anaerolinea → Anaerolinea thermophila1
All Organisms → cellular organisms → Bacteria → Proteobacteria4
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales1
Not Available2
All Organisms → cellular organisms → Bacteria → Spirochaetes1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geobacter → Geobacter sulfurreducens1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Lophotrochozoa → Annelida → Clitellata → Hirudinea → Rhynchobdellida → Glossiphoniidae → Helobdella → Helobdella robusta1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Microbacterium → unclassified Microbacterium → Microbacterium sp. 8M1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → Haliangium → Haliangium ochraceum1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameWetland Sediment Microbial Communities From Dorn Creek, Dane County, Wisconsin, Usa, Enriched For Fe-Cycling Cultures
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Wetland Sediment → Wetland Sediment Microbial Communities From Dorn Creek, Dane County, Wisconsin, Usa, Enriched For Fe-Cycling Cultures

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biome → bayou → sediment
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Sediment (non-saline)

Location Information
LocationDorn Creek (Dane County, WI)
CoordinatesLat. (o)43.135131Long. (o)-89.441777Alt. (m)N/ADepth (m)0 to .3048
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001490Metagenome / Metatranscriptome685Y
F003345Metagenome / Metatranscriptome493Y
F005815Metagenome / Metatranscriptome389Y
F009406Metagenome / Metatranscriptome318Y
F010436Metagenome / Metatranscriptome304Y
F016728Metagenome / Metatranscriptome245Y
F020721Metagenome / Metatranscriptome222Y
F025315Metagenome202Y
F036300Metagenome170Y
F040357Metagenome / Metatranscriptome162Y
F042358Metagenome / Metatranscriptome158Y
F042447Metagenome / Metatranscriptome158N
F046478Metagenome / Metatranscriptome151N
F052142Metagenome143N
F053350Metagenome / Metatranscriptome141Y
F055797Metagenome / Metatranscriptome138Y
F059807Metagenome / Metatranscriptome133Y
F060792Metagenome / Metatranscriptome132Y
F063150Metagenome130Y
F066903Metagenome126Y
F069975Metagenome123Y
F070935Metagenome / Metatranscriptome122Y
F077208Metagenome / Metatranscriptome117Y
F080211Metagenome / Metatranscriptome115Y
F082105Metagenome / Metatranscriptome113Y
F086025Metagenome111Y
F089952Metagenome / Metatranscriptome108Y
F096266Metagenome105Y
F101398Metagenome / Metatranscriptome102Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
FeGlu_10004106All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geobacter5925Open in IMG/M
FeGlu_10014129All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales649Open in IMG/M
FeGlu_10014170All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geobacter11812Open in IMG/M
FeGlu_10038279All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geobacter9610Open in IMG/M
FeGlu_10048232All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geobacter4424Open in IMG/M
FeGlu_10056192All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria753Open in IMG/M
FeGlu_10071264All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium738Open in IMG/M
FeGlu_10071842All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1398Open in IMG/M
FeGlu_10079834All Organisms → cellular organisms → Bacteria → Terrabacteria group505Open in IMG/M
FeGlu_10086813All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium atlanticum1375Open in IMG/M
FeGlu_10093431All Organisms → cellular organisms → Bacteria971Open in IMG/M
FeGlu_10113132All Organisms → cellular organisms → Bacteria685Open in IMG/M
FeGlu_10126479All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → Anaerolinea → Anaerolinea thermophila4488Open in IMG/M
FeGlu_10137760All Organisms → cellular organisms → Bacteria → Proteobacteria3308Open in IMG/M
FeGlu_10214697All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales769Open in IMG/M
FeGlu_10215954Not Available790Open in IMG/M
FeGlu_10222279All Organisms → cellular organisms → Bacteria1285Open in IMG/M
FeGlu_10242621All Organisms → cellular organisms → Bacteria → Spirochaetes699Open in IMG/M
FeGlu_10291682All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi814Open in IMG/M
FeGlu_10291972All Organisms → cellular organisms → Bacteria734Open in IMG/M
FeGlu_10304747All Organisms → cellular organisms → Bacteria → Proteobacteria698Open in IMG/M
FeGlu_10314096All Organisms → cellular organisms → Bacteria → Proteobacteria1008Open in IMG/M
FeGlu_10335153All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria833Open in IMG/M
FeGlu_10362238All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geobacter → Geobacter sulfurreducens2917Open in IMG/M
FeGlu_10422968All Organisms → cellular organisms → Bacteria → Proteobacteria1264Open in IMG/M
FeGlu_10436740All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Lophotrochozoa → Annelida → Clitellata → Hirudinea → Rhynchobdellida → Glossiphoniidae → Helobdella → Helobdella robusta639Open in IMG/M
FeGlu_10463186All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula705Open in IMG/M
FeGlu_10514264All Organisms → cellular organisms → Bacteria1396Open in IMG/M
FeGlu_10557464All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium867Open in IMG/M
FeGlu_10615171Not Available689Open in IMG/M
FeGlu_10637766All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Microbacterium → unclassified Microbacterium → Microbacterium sp. 8M666Open in IMG/M
FeGlu_10645040All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → Haliangium → Haliangium ochraceum650Open in IMG/M
FeGlu_10710568All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium750Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
FeGlu_10004106FeGlu_100041064F096266MIDARIVFLLLTALLLSILVAIAVATFRKNRKQKLEDPKYRMLKDD*
FeGlu_10014129FeGlu_100141292F096266MIEARIAFLLLTAIMLAILTAIAVATLRKKRKTKLEEPKYRMLNDD*
FeGlu_10014170FeGlu_100141705F063150MRLTIFLAALLITGAAQATSYVPQFPKGLEQFTTIEGIKFKDASGTSNPPSIPKSWKLISVSIGEKSNSNNLWFQDVDGSVYLLQGFTSQNKFIIHEHVYKIPAK*
FeGlu_10038279FeGlu_1003827910F063150MRKILVIIMFLLTIPVAWAVSVPPPQVPPPVHEELATVEAIKFRDAQGTITPPTIPKSWKLISVSNGEKSNANNLWYQDTDGSVYLLQGFTSKNKFYIHENVYKIQAK*
FeGlu_10048232FeGlu_100482324F096266MIDARLVFLLLTALLLLILVAIAVATFRKKRKQKLEDPKYRMLEDD*
FeGlu_10056192FeGlu_100561921F069975EARAYPVAMVVFSNRRLGPGAELLVSREVASELLCEVAEAAGPAAQARWEHELVSWLQRCAASGSTSIDVADIAWTPEHFERQRRFLVEAIQRAQAGSRHGRALTRWCG
FeGlu_10071264FeGlu_100712643F060792SDASTVSEPMTWSEVCERFPDHWIALVALDWADDHDEPFRTALVAGCGSRREALAQARPLLRLFESLGPFFTGDRSAALPALPPIVCVA*
FeGlu_10071842FeGlu_100718422F003345MRSKVMTARPAARKGNGSRTKKTVAVAXXXIIQMVERARTPAPPRVAAELPKKVGELPIPVATFVF*
FeGlu_10079834FeGlu_100798341F025315LRKVIPSLVIIPVFWYFTYTILHELSHAAGTYLVGGKVIAWRLIPRFWLGEFSGAWATPGGFTQSWQQLTSSAFPYILDIVCLVVAIAVFRRRFSGNPFYVGLVFMLLCLRPAFDVVGETIGFLTGWRGDLYFIQLIAGPFALWSLILISIGLSLVSISSTISQVVRF
FeGlu_10086813FeGlu_100868132F016728MMTKVLPTVCVTCVWAGVDSAWEQEKLEATLREMLENAAESHTSGARCVRCGFV*
FeGlu_10093431FeGlu_100934312F042358MTDDAPWSAYMALDGPHLDGLIGSAGVLRFDWPERKFYFQHFEGISAAHNVSIARNAQLALLGNFSQQIVVLDITKADRIREVRRQSTMYFEQTAYRLRSNTHHLWEPDNQHFIGAIGDHLYRFDVDDLKAPEXXXXXXXCGGTPRAAIS*
FeGlu_10113132FeGlu_101131322F052142MANCKLCHAARLETESELIQTICAPCATKIGTTSMPPPRRPDVPCPRCRGTRFIRVFPRERFVIDTASKWLGADFGSIGAMYAPMAATYDVSIVRHQVGVMIGAPEVRGLDLTRPRGLIARYICSTCGFVELFCEDPESIPIGPEYMSDVVDYGGXYGGSKPYR*
FeGlu_10126479FeGlu_101264793F010436MELEVYSQSINRGVIKMPSQGFPGLLLQGETLATLLGLARSIHEKAQGTSDTELIDSSFELRDSLQKLVSHYESTLTKHNIPLPYSTVK*
FeGlu_10137760FeGlu_101377601F005815MTMKVTRLTTYWTLDEAATVIDFLDTLRDALWDTYGEQITTMHREAYDDHIRDTNQRELEFDDDIPF*
FeGlu_10137760FeGlu_101377605F082105MAALIWRDPPRCTGQPNVTVQRAVASTIMRIDSVGSGRANEKK*
FeGlu_10214697FeGlu_102146972F036300MDDMVAQGFGAIIIIYGALIAIAVGMVFFIERFWNALVNGDTGFILWSGAIILGSVSLYTGCGLLLRKYGII*
FeGlu_10215954FeGlu_102159541F009406MRIIETRELERLVRETFPARHFFSAATELGLQAGRSVVTFVHGGPDPFLDRGFDAWLGGAAKFIAAHQLLNRLCRAGALAPGDYAITTRH
FeGlu_10222279FeGlu_102222791F001490MKQPDTAQILHEIAQIQHMELGKLCIIRQGPTGPYYNLQCRENGKPVSRYVPGDQVELVAQHTANYQRFQALVTQYAQLITERTRTERTAGSKKKTSPPRSSWPKTRRSSS*
FeGlu_10242621FeGlu_102426211F080211LGMLYAAVIGCAVIWLLEMPHRPLTIMQSAVFYVLSYLPGLGLAMLSDPAAHRAKAEYLKVDYYAPREET*
FeGlu_10291682FeGlu_102916821F046478MLAADVNCFWALEQDQESYNREVYLPDAYIEVIINVGAPLVLESEHGMLELPRAFVNPLQNKPLRIRAAGFCQMISMQLYPWA
FeGlu_10291972FeGlu_102919721F040357WTIDWFSSAVMFPGWAEYGDEPFLWRGPATYDPLIVYQPRTWLLREGWRKAGAISCQEVPAKKR*
FeGlu_10304747FeGlu_103047471F042447HYMASGGRRRDDARKEAERRAHMSGTQQLMELDGIDEDVLGVLASANIHSPEDLIKTPIEAIATSTGIDMGDLARLRQRAISW
FeGlu_10314096FeGlu_103140962F101398MSDRYAAWIRDRLAEHVPEATSDPAAALQLAHAWAALSGHGKEIFGMEMPAELAERTALRDECLAALKKWIPLLDKPARDQLRQMLTAYAVPSDLDLGFRRAGE*
FeGlu_10335153FeGlu_103351531F020721MSTTALPTLPSELLTRPAGGVSMRLTQYGYPGDPYSDSETRKGHGAYHPLVSGESVALTDSGLRALGLSRADVRREHPWIDIQLRGGGSLERRIDDRAPESNRRADLYQPGGFDRRLPDYADV
FeGlu_10362238FeGlu_103622385F063150MRLSIVLAALLIAGTAQATSYVPQFPQGLEQFTTIEGIKFNDASGKHNPPSIPKSWKLISVSNGEKANANNLWFQDSDGSVYLLQGFMSRNKFIIHENVYKIPAK*
FeGlu_10422968FeGlu_104229683F040357RAPMSSWTIDWFSSAVMFPGWTEYGDEPFLWRGPPTYDPLIVYQPRTWLLREGWRKAGAISCRDVPSAAR*
FeGlu_10436740FeGlu_104367401F077208KMKLITVLCAFIIFLISCQQPDKKVFSAEFRVDKSLISDNAFASKSGFSISPPKNWLKTESYNSVLQKKMLSHLDNKLLAIYKSDSTNCALIISELPESNYDIIKGLLSKTNYSPRQDSVWTNVESSVFIYKSYEIIQVVSQNSELVIFKLLTHRLSELYELDYIIPRSEININMQSVESSIGSLN*
FeGlu_10463186FeGlu_104631862F089952VLEPMNRLFTEDLNQEKIQWVIENIDELFLDMEENENDTY*
FeGlu_10514264FeGlu_105142641F086025MQAEYEMKVQVIRSKGRAARLFVNIPMPLAAALDIQAGERIRWQLLGRSDLRLVRLEAPSPAKGLQK*
FeGlu_10557464FeGlu_105574642F055797IQAPFVLAEIRALRSSIFKKTQEVQTALAVADKVEQSYDLHRADLFIPAGDTWCAILDPFAMTVLTGTLRRIGYEIFPQYVQILGIQPANVRTAMDLKVPADLVRTICEAYSRCVVGEDAGTLSPEVQGSTVTVTDSTIIPCQLQMGVFLGAGKLTGLFRENVLVEKRCRNKGDSVCTYEFVF*
FeGlu_10615171FeGlu_106151712F059807DLRSGLHVSDDLGKHSHGSATNQKLCSSPEYSNQRGNLASVAWRLPSGYPRKLNGKNGFPNRDSDFVVLEDDGIRQVISGLANKWFISSSDPGXXXXXXXXXXXXXTVAEH*
FeGlu_10637766FeGlu_106377662F053350VLEFLDLRERGERLEATRLEIDPTVADTVTRILQRVFVEGDEVLIE
FeGlu_10645040FeGlu_106450401F070935APRYRPGMVRGFIGARLGVRLAPWVFLLGAFGVLGGLSAGCQPLYGGKADRLPTPQRKKAPKEEQVVEPPVKMVEDCTADFRADPRTVRQQTSQSNDLTDQGTTAIANSDKSTDPSAQAGLIREGIDKFRNALIKDPYNAAATLKLALAYDKVYRKGCAIAMLKRLATLAANPRFSRSANAEIDSIGDNGQWFKHYRKDAMAAVGR*
FeGlu_10710568FeGlu_107105682F066903LKRRFRQKQDLAPKEDPENDKGVSNDEAQENVDIDDVIREIDTLLNTHQ
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