Sample 3300003155

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300003155

3300003155: Broiler Chicken cecum microbial communities from the University of Birmingham, UK

Overview

Basic Information
IMG/M Taxon OID	3300003155 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0111493 \| Gp0097869 \| Ga0052270
Sample Name	Broiler Chicken cecum microbial communities from the University of Birmingham, UK
Sequencing Status	Permanent Draft
Sequencing Center	University of Birmingham
Published?	Y
Use Policy	Open

Dataset Contents
Total Genome Size	286286924
Sequencing Scaffolds	1
Novel Protein Genes	1
Associated Families	1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → unclassified Bacteroidia → Bacteroidia bacterium UC5.1-2G11	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Broiler Chicken Cecum Microbial Communities From The University Of Warwick, United Kingdom
Type	Host-Associated
Taxonomy	Host-Associated → Birds → Digestive System → Ceca → Lumen → Broiler Chicken Cecum → Broiler Chicken Cecum Microbial Communities From The University Of Warwick, United Kingdom

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal proximal gut

Location Information
Location	University of Birmingham, UK
Coordinates	Lat. (^o)	50.9047	Long. (^o)	-3.5233	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F051936	Metagenome	143	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0052270_10308069	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → unclassified Bacteroidia → Bacteroidia bacterium UC5.1-2G11	3072	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0052270_10308069	Ga0052270_103080694	F051936	MKQEGTGLCPVLPLALRGKAFGFSVLQEHAVMTLVISIFFATLIIRYLSIHISIKK*

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