NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300003217

3300003217: High solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-6-D



Overview

Basic Information
IMG/M Taxon OID3300003217 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0110114 | Gp0088366 | Ga0008107
Sample NameHigh solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-6-D
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size165828723
Sequencing Scaffolds23
Novel Protein Genes28
Associated Families2

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available23

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameIonic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa
TypeEngineered
TaxonomyEngineered → Lab Enrichment → Defined Media → Unclassified → Unclassified → Ionic Liquid And High Solid Enriched → Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationJoint BioEnergy Institute, California, USA
CoordinatesLat. (o)38.5402Long. (o)-121.75Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010514Metagenome302Y
F038929Metagenome / Metatranscriptome164Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
JGI26054J46599_1021028Not Available1148Open in IMG/M
JGI26054J46599_1021332Not Available1137Open in IMG/M
JGI26054J46599_1021573Not Available1127Open in IMG/M
JGI26054J46599_1022090Not Available1109Open in IMG/M
JGI26054J46599_1024599Not Available1028Open in IMG/M
JGI26054J46599_1026214Not Available981Open in IMG/M
JGI26054J46599_1034200Not Available818Open in IMG/M
JGI26054J46599_1035101Not Available803Open in IMG/M
JGI26054J46599_1036756Not Available778Open in IMG/M
JGI26054J46599_1037883Not Available763Open in IMG/M
JGI26054J46599_1042526Not Available708Open in IMG/M
JGI26054J46599_1047509Not Available659Open in IMG/M
JGI26054J46599_1056808Not Available590Open in IMG/M
JGI26054J46599_1059751Not Available572Open in IMG/M
JGI26054J46599_1060000Not Available570Open in IMG/M
JGI26054J46599_1061811Not Available560Open in IMG/M
JGI26054J46599_1061865Not Available560Open in IMG/M
JGI26054J46599_1062746Not Available555Open in IMG/M
JGI26054J46599_1064141Not Available548Open in IMG/M
JGI26054J46599_1064936Not Available543Open in IMG/M
JGI26054J46599_1065462Not Available541Open in IMG/M
JGI26054J46599_1066859Not Available534Open in IMG/M
JGI26054J46599_1067566Not Available530Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
JGI26054J46599_1021028JGI26054J46599_10210281F010514KRDEIGRKREIKILVRNSVCTRPGQENFEKNSKTIQKIIKPLPGIISSQNGMR*
JGI26054J46599_1021332JGI26054J46599_10213321F010514ILVPNSVLTRPGQENSEKNSKKIQKIIKPLPGIIFSQNGMQ*
JGI26054J46599_1021573JGI26054J46599_10215732F010514ENKILVPNSVLTRPGQENSEKNSKKIQKNIKPLPGIISSQNGME*
JGI26054J46599_1022090JGI26054J46599_10220902F010514MVGRKSEYKILVPNFVHTRTEQENSEKNIKKIQKIIKPLPRIIFSQNGMRLADKVNTKF*
JGI26054J46599_1024599JGI26054J46599_10245991F010514QKRDEIGRKRENKILVPNSVHNRPRQENSEKNSYKIQKIIKPLPGIIFSENGMR*
JGI26054J46599_1026214JGI26054J46599_10262142F010514VIGRKRENKILVPNSVHTRPGQENSEKNSKKIQKIIKPLPGIIFSQKGMRLADKVTTKF*
JGI26054J46599_1030094JGI26054J46599_10300941F010514NLFPALFLAKRDEISRKSENKILLQNSVHTRPGQENSEKNSKKIQKIIKPLPGITFSQNGTR*
JGI26054J46599_1034200JGI26054J46599_10342001F010514VKKKILVPNSVHTRLGQENSEKNSKKIQKIIKPIPDIIFTQNWKI*
JGI26054J46599_1035101JGI26054J46599_10351011F010514EIGRKRENKILVPNSIHTRPGKENFEKNSKIIKKIIKTIPGIISSKNGMR*
JGI26054J46599_1036756JGI26054J46599_10367561F038929MTIRARIGRKIGNKNNFLPNRSNPARVRKFENKCKKILKIKKHHPGFITRRNGS
JGI26054J46599_1037869JGI26054J46599_10378692F010514DEIGRNREKKILVPNSVHTRPGQENSEKYSKKIKKIIKHLFGHSFTKNGMR*
JGI26054J46599_1037883JGI26054J46599_10378831F010514FVPNSVHTRPGQENSEKYSKKIQKIIKPLFGIIFSKNGMR*
JGI26054J46599_1039040JGI26054J46599_10390402F010514RESEKKKKNLVPNSVHTRPGQENSEKNSKKFQKINKPLSGINFSQNGMR*
JGI26054J46599_1042526JGI26054J46599_10425262F010514DITGREGQKSENKILPQNSVHTRPEQENSEKNSEKIQKIIKPIAGIIFSENGMR*
JGI26054J46599_1047509JGI26054J46599_10475091F010514DEIGRKRENKILVPNSIHTRPGKENSEKNSKIIPKIIKPIPGIISS*
JGI26054J46599_1055109JGI26054J46599_10551091F010514LVPNSVHTRPGQENFEKXSKKIQKIIKPIPGIIFSPNGKI*
JGI26054J46599_1056808JGI26054J46599_10568081F010514ENKIFVPNSVHTRPGKQNSEKTSKKIQKIIKPIPGIIFSQNGTR*
JGI26054J46599_1059751JGI26054J46599_10597511F010514KILVPNSVHTRPGQENCEKNSKKVQKIIKPLPGNIFSENGMRYAEKEKTKF*
JGI26054J46599_1060000JGI26054J46599_10600001F038929SRLHYKMKRVRTGRKIVNKKNFIPIRSIPTRVRKFKNKCKKILKIKKPHPDFISRRNGSGQAEK*
JGI26054J46599_1061811JGI26054J46599_10618111F010514KRDEIGRQSEHKILVPNSVHTRPGKENSEKNCKKIQKIIKPLPAIIFSQNGTR*
JGI26054J46599_1061865JGI26054J46599_10618651F010514LPKLDEIGQNKENKILALNSVHTRPGQENSEKNSKQIQKIIKPLPGIIFSQNGMR*
JGI26054J46599_1062746JGI26054J46599_10627461F010514MRWGRKKENKILVPNSVHTRHGQENSEKNSKKIQKIIKPLPDIIF*
JGI26054J46599_1064141JGI26054J46599_10641411F010514SRKSENKILLQNSVHTRPWQENSEKNSKKIQKIIKPIPGIFSRHNGTR*
JGI26054J46599_1064936JGI26054J46599_10649361F010514IGQKSGNKILVPNSVLTRPGQENSEKNLKKIQKVIKPIPGIISSQNGII*
JGI26054J46599_1065462JGI26054J46599_10654622F038929MLRLRKGRKIENKKNFIPIRSNPTRVRKFKNKCKKILKITKHHPGFISRR
JGI26054J46599_1066859JGI26054J46599_10668591F010514KSENKILLQNSVHTRRGQKNSEKNSKKIQKIIKPLPGIIFSENGTR*
JGI26054J46599_1067566JGI26054J46599_10675662F010514MKYAKKKENKILVLNSVHARPGQENSEKNSKKIQKIIKPLPGIIYSQNEMR*
JGI26054J46599_1074093JGI26054J46599_10740931F010514RDEIGRNREKKNLVPNSVQTRPGQENSEKYSKKFQKIIKPLPCIFFSQNSMR*
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