Sample 3300003234

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300003234

3300003234: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-SCHO22-D

Overview

Basic Information
IMG/M Taxon OID	3300003234 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0095510 \| Gp0091542 \| Ga0008858
Sample Name	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-SCHO22-D
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	1421077
Sequencing Scaffolds	2
Novel Protein Genes	2
Associated Families	2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → agricultural field → agricultural soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Wisconsin, United States
Coordinates	Lat. (^o)	43.3	Long. (^o)	-89.38	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F038225	Metagenome / Metatranscriptome	166	Y
F060880	Metagenome / Metatranscriptome	132	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
JGI26301J46818_10195	Not Available	541	Open in IMG/M
JGI26301J46818_10217	All Organisms → cellular organisms → Bacteria	528	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI26301J46818_10195	JGI26301J46818_101951	F038225	MKRFSLVLLGAVGAFLVLTPAQAADYRVIQYNDTKICQVVDMAGPFKPILSNYTVLTKKSVATFDAAVKARADVGAKAKCTF*
JGI26301J46818_10217	JGI26301J46818_102171	F060880	MEVAMRISADFRKTQRRRAELRSRSEAMVATIWLVFYVLGIAVAVSSPIISRAIELAAQ*

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