NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300003266

3300003266: Human fecal microbial communities from Spain - Individuo 1



Overview

Basic Information
IMG/M Taxon OID3300003266 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0111431 | Gp0103192 | Ga0057482
Sample NameHuman fecal microbial communities from Spain - Individuo 1
Sequencing StatusPermanent Draft
Sequencing Center
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size37999277
Sequencing Scaffolds5
Novel Protein Genes6
Associated Families5

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → unclassified Faecalibacterium → Faecalibacterium sp. Marseille-P93121
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Fecal Microbial Communities From Spain
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Spain

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
Location
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047125Metagenome / Metatranscriptome150N
F062845Metagenome130N
F078693Metagenome116N
F087335Metagenome110N
F101356Metagenome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
BAAUDRAFT_1000940All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii3254Open in IMG/M
BAAUDRAFT_1002912All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii2251Open in IMG/M
BAAUDRAFT_1010172All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii1226Open in IMG/M
BAAUDRAFT_1018850All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → unclassified Faecalibacterium → Faecalibacterium sp. Marseille-P9312538Open in IMG/M
BAAUDRAFT_1023477All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium1007Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
BAAUDRAFT_1000940BAAUDRAFT_10009403F078693MVFAPMRGAERFFIKADCSLLMSKENQKSTSDFDALDPRERGYSPLSDPEGVVEAQKC*
BAAUDRAFT_1002912BAAUDRAFT_10029123F047125MDVVLLLMVLGVMLSGFWAADALDHMRKEIIRQEGKRRGWWS*
BAAUDRAFT_1010172BAAUDRAFT_10101722F062845MEKTPFILHEKFRSDNNEQRKEHFQKKFERYIVDELSNTALSKSCA*
BAAUDRAFT_1015627BAAUDRAFT_10156271F101356GFGDVGELMPVVTPEKDGLSNSKFATTKIKSEGKRSVLLYRSSSSQWAPFAIRVSCISTGEPSSDFCVYIAGNTMELQDTTKVYVKYLYGQPNSDTYLKMKYESDHRISIYLTSDNSLGDRTIVRELIVRDSMYDMATQDDEITGLADCTIVQ*
BAAUDRAFT_1018850BAAUDRAFT_10188501F062845MKKTPFILHEKFRSENNEQRKERFQKEFERYIIDGLLNAVPSRSCA*
BAAUDRAFT_1023477BAAUDRAFT_10234772F087335MLELYFNDGNFLPESREEEQSAETVLNIMLAGKTTDTEMCIWPCFYHAPMCKGVLINLDDGTTLRIKPFLNKEGEPELLIGCVTEETVGEVYQWVSNYD*
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