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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300003625 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0069917 | Gp0107659 | Ga0061036 |
| Sample Name | Hypersaline viral communities from Bras del Port, Santa Pola, Spain - CR30 Febrero14 Julio precorrection |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Lifesequencing S.L. |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 1189112 |
| Sequencing Scaffolds | 5 |
| Novel Protein Genes | 5 |
| Associated Families | 4 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → Viruses → Predicted Viral | 1 |
| Not Available | 1 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kirjokansivirales → Haloferuviridae → unclassified Haloferuviridae → environmental Halophage eHP-42 | 1 |
| All Organisms → Viruses → environmental samples → uncultured virus | 2 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Hypersaline Viral And Bacterial Communities From Bras Del Port, Santa Pola, Spain |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Microbial Mats → Hypersaline Samples → Hypersaline Viral And Bacterial Communities From Bras Del Port, Santa Pola, Spain |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | aquatic biome → saline evaporation pond → hypersaline water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Hypersaline (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Bras del Port, Santa Pola, Alicante, Spain | |||||||
| Coordinates | Lat. (o) | 38.192206 | Long. (o) | -0.591865 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F054456 | Metagenome | 140 | N |
| F065465 | Metagenome | 127 | N |
| F066493 | Metagenome | 126 | Y |
| F088354 | Metagenome | 109 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| CR30jul_10035 | All Organisms → Viruses → Predicted Viral | 1437 | Open in IMG/M |
| CR30jul_10054 | Not Available | 1218 | Open in IMG/M |
| CR30jul_10089 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kirjokansivirales → Haloferuviridae → unclassified Haloferuviridae → environmental Halophage eHP-42 | 1051 | Open in IMG/M |
| CR30jul_10220 | All Organisms → Viruses → environmental samples → uncultured virus | 746 | Open in IMG/M |
| CR30jul_10374 | All Organisms → Viruses → environmental samples → uncultured virus | 600 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| CR30jul_10035 | CR30jul_100354 | F065465 | MSEDITVVCECDVLDEARSMGYRRYADMPAADIVAAWPVHYTEHGSWDRHIEPTLRCLAGYGDRGHGTYQYRQDVALIQDGDEADMPTDAIILDSGHLLDDIIVSWQDGAHTAVTDTLRQSDEYSLEDIEQ* |
| CR30jul_10054 | CR30jul_100544 | F066493 | DVADELVQEHSAEGASERLQSRRQTSSDELQHRCTEAIAYIRREVQADA* |
| CR30jul_10089 | CR30jul_100892 | F054456 | MSYRPTLDFETDTEKLSPQRAHDRWEDVTNLDTPELEQLEDSRRTELYLDAAEGNQGDDNPPIPGGPLDDAQHLASTPRDEWGPDERAEAEEALNFLSRTMPQFEQSEGEPLIEDEPPKIHKDELSIMRWGVDPNPEDDFL* |
| CR30jul_10220 | CR30jul_102201 | F065465 | MSDTITVVCECDAKDEAHSMGYRRYADMPAADIVAAWPVHYTEHGSWDRHIEPTLRCLAGYDDAGYGTYQQRQEIALIRDGDESDHPTDALLIDSMHLFDEITDAWYNGAHQA |
| CR30jul_10374 | CR30jul_103741 | F088354 | MTDTPRAQLDVDRFETATVNANGQIYLGRDLQGVKVHVAIEIVTDDDEQEDPE* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |