NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300003635

3300003635: Hypersaline viral communities from Bras del Port, Santa Pola, Spain - Lo Valdivia P5



Overview

Basic Information
IMG/M Taxon OID3300003635 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0069917 | Gp0107657 | Ga0061045
Sample NameHypersaline viral communities from Bras del Port, Santa Pola, Spain - Lo Valdivia P5
Sequencing StatusPermanent Draft
Sequencing CenterLifesequencing S.L.
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size22070040
Sequencing Scaffolds35
Novel Protein Genes35
Associated Families27

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria3
Not Available10
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage2
All Organisms → Viruses → Predicted Viral12
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED2031
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Pontimonas phage phiPsal11
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Caudoviricetes sp.1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHypersaline Viral And Bacterial Communities From Bras Del Port, Santa Pola, Spain
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Microbial Mats → Hypersaline Samples → Hypersaline Viral And Bacterial Communities From Bras Del Port, Santa Pola, Spain

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biome → saline evaporation pond → hypersaline water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Hypersaline (saline)

Location Information
LocationBras del Port, Santa Pola, Spain
CoordinatesLat. (o)38.192206Long. (o)-0.591865Alt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001864Metagenome624Y
F002322Metagenome / Metatranscriptome571Y
F006304Metagenome / Metatranscriptome376Y
F006972Metagenome / Metatranscriptome361Y
F009454Metagenome317Y
F010211Metagenome / Metatranscriptome307N
F013961Metagenome / Metatranscriptome267Y
F022152Metagenome / Metatranscriptome215Y
F031511Metagenome / Metatranscriptome182Y
F032166Metagenome180Y
F035743Metagenome171N
F037490Metagenome / Metatranscriptome168Y
F038111Metagenome166N
F043370Metagenome / Metatranscriptome156Y
F051561Metagenome / Metatranscriptome144N
F061556Metagenome131Y
F062724Metagenome130N
F066262Metagenome127Y
F066493Metagenome126Y
F074590Metagenome / Metatranscriptome119Y
F078533Metagenome / Metatranscriptome116Y
F083416Metagenome / Metatranscriptome113N
F083929Metagenome112N
F088532Metagenome109Y
F091964Metagenome107Y
F098766Metagenome103Y
F099972Metagenome103Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
p5metav_100040All Organisms → cellular organisms → Bacteria20997Open in IMG/M
p5metav_100081Not Available15095Open in IMG/M
p5metav_100114All Organisms → cellular organisms → Bacteria12689Open in IMG/M
p5metav_100167All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia10160Open in IMG/M
p5metav_100308Not Available7207Open in IMG/M
p5metav_100333Not Available6866Open in IMG/M
p5metav_100442All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage5846Open in IMG/M
p5metav_100454All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia5772Open in IMG/M
p5metav_100931All Organisms → Viruses → Predicted Viral3800Open in IMG/M
p5metav_100965All Organisms → Viruses → Predicted Viral3725Open in IMG/M
p5metav_101112All Organisms → Viruses → Predicted Viral3440Open in IMG/M
p5metav_101687All Organisms → Viruses → Predicted Viral2679Open in IMG/M
p5metav_101838All Organisms → cellular organisms → Bacteria2545Open in IMG/M
p5metav_102002All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales2403Open in IMG/M
p5metav_102035All Organisms → Viruses → Predicted Viral2386Open in IMG/M
p5metav_103063All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1861Open in IMG/M
p5metav_103300Not Available1775Open in IMG/M
p5metav_103670All Organisms → Viruses → Predicted Viral1657Open in IMG/M
p5metav_103826Not Available1613Open in IMG/M
p5metav_103897All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group1594Open in IMG/M
p5metav_104321All Organisms → Viruses → Predicted Viral1492Open in IMG/M
p5metav_104436Not Available1469Open in IMG/M
p5metav_104885All Organisms → Viruses → Predicted Viral1378Open in IMG/M
p5metav_105216All Organisms → Viruses → Predicted Viral1318Open in IMG/M
p5metav_105457All Organisms → Viruses → Predicted Viral1277Open in IMG/M
p5metav_105465All Organisms → Viruses → Predicted Viral1276Open in IMG/M
p5metav_105874All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria1210Open in IMG/M
p5metav_105875All Organisms → Viruses → Predicted Viral1210Open in IMG/M
p5metav_106454Not Available1131Open in IMG/M
p5metav_106806Not Available1093Open in IMG/M
p5metav_107483Not Available1020Open in IMG/M
p5metav_107851All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED203982Open in IMG/M
p5metav_108682Not Available910Open in IMG/M
p5metav_108960All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Pontimonas phage phiPsal1890Open in IMG/M
p5metav_109438All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Caudoviricetes sp.855Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
p5metav_100040p5metav_10004022F013961MDIATILTRKYSGAEWVLNGDAYSGLTWLSDGDAPSEADLKKLWPVVEKEIAAEAQAKLDAKASAVAKLEALGLTVEEVSVAFGLEA*
p5metav_100081p5metav_10008112F006304MPKKLTAAEKYAQLKAQTEAAGMKVREVDGKIVVERKRKPAKKK*
p5metav_100114p5metav_1001143F078533MTPQQFKEARRYLCLSQRDLADIWGMGRNGERSIRRWEQGDVPVNPIAAYCITLMVGSAAPHDKPA*
p5metav_100167p5metav_10016713F031511VASKIPGGGGEVKLNRKGIGELLRSNEIASELRNRMRRVQAALPGSELEVTTKGRRARAKVARGSDFEEANTGELSRALDLAGGQRGTKVKSRKPRARKAST*
p5metav_100308p5metav_1003087F091964MSKHVRVKLTCEIEFDLEDLNSDVADDIREMCDLDSFEAIENDHIKLYVGEQDVYEMNDQFGIADAEIQEVIVE*
p5metav_100333p5metav_10033311F074590MVVSIRLWHVFGLSVESVEAQPIYGHMPHESEEDAQVFFFDGYIINIPFVKIMIGDVWGIADN*
p5metav_100442p5metav_10044210F099972MPKATTGKRLLNLPQAAEYSAKSYERGLEEGRRQMQAEMLNALEALSAEAKKDLKEQLNDL*
p5metav_100454p5metav_1004547F006972VLCTLACCSLSRRCWRLRLRRARDRVSVGDRIGAGLEPALLSTQMRVEGLADLTKTLRTLDRKALNKLRAEMRGMINPVAKAIGGDVPSQAPLSGMNHNGVTRWTGTVRSSVSFTPGRAKGGASRLLAMKFTGGTRAGGGIGFDYAELAGSSRRPGARFSREYDRAGSPGIQHRINGQGRAFNQGIRAYKPIRGRAGYFAYDSAVKRYPMIEGLGKRAIEKFMADATREIGRFR*
p5metav_100931p5metav_1009311F083416TYVHCRIHVEAYCLIKTPVAIQPAYTIYFERFADRTWTHADVHKWTPDIKKEFMQVHGLLQMMHTEPFYCLTDNPKLEKFVQLLGYEYVQTLSCDDGIDRPMWRYTNG*
p5metav_100965p5metav_1009653F038111MIHRVPVVNKNDYTIWLENYRNIANFIHAEVYNYNKTVRQEFGKDLNVLAKLHNAPLYVLTDKDNKKLKKFMSIYGLVLDHTPLCDDGVEREVYRLDRRV*
p5metav_101112p5metav_1011123F002322VAYDPLPYSKNVEKHILECIQGGVGIREMIASMQHLQGAPKSLSTLYKIYGDVIHAERARINAAVGRKVIDQALKGHFKSQELFLRSKGGWSPKETVETNEGIDEDTDESAVDSLMTLLGKDEEDE*
p5metav_101687p5metav_1016877F066493MSDTEREWTDGVIDVAAELVKRHSADGAIERLQTRRQTTDDELQARCNEAIAWIRREVQGDA*
p5metav_101838p5metav_1018386F013961MDIAKILTRKYEGSEWTLDGDDYAGLTWLSDGEAPTEAELKKLWPKVQADIAAEAQAKIDAKASAIAKLEALGLTVDEVQAAFGLSTDETE*
p5metav_102002p5metav_1020022F062724MGAMKQNDVQFQEAMNLAMTSHNKELADTVAWYRAHFDKLPAELMRAILTDDEFFQKAVTVWDNERFAPKPASEHVALQVPLVSRRDLREPKRVTYRCALVIGLVGAALITGVAVLVVAL
p5metav_102035p5metav_1020353F031511MASKIPGGGGEVKLNSAGIRDLLRSQEIETELRGRMAKVRGALPGSELYVTRSRTRVAVKVKRGSDYDEANTGDLSRALDLAGGRRGTQVKTRKPKRGA*
p5metav_103063p5metav_1030633F001864MTQYRFEIDSNNAIRIWDTLNPNENDAPFMLQPDWPDTTPWESANQAKNWAEVFIESLENNESKFVAGNSPETHPALRPQPEEGK*
p5metav_103300p5metav_1033004F013961MDIAQILTRKFPGQEWTLNGDSFEGLTWLSDGPAPSEAELTGLWPEVEAEIQAEADAKVAAKRSAVAKLEALGLTVEEVSVAFGIEV*
p5metav_103670p5metav_1036704F043370WELNGLPFDLMPRIEAGDVAPHDLREIAAFLRNLNGANIDVSTHPEVIQDLMDIAELNYDPDVSQPTQQQQEATDGEQ*
p5metav_103826p5metav_1038263F009454MPNFEEIEAAILEVQQPRSRFQLERFVIGQHKTEEMQFYQTCIELQDMIYKYQSAKLNVQKQELKIKRLRETGDELKELKAQELELGLKQTYTAMKGAEREMLALTEIFYEFPKRYTREEIEAAQPSYWDERLTGNAKAQLMGGSGVNPAHIEAMEQAGVLDKLIEEVQESKRELGL*
p5metav_103897p5metav_1038974F032166AIELLETPADEWRDLDDGFNEIEEAEELLDFQRRTQGQIDAQGLGENYLTDAQDMTKREAASIRWAIDPDTEREWL*
p5metav_104321p5metav_1043214F061556MYRLATQNKIGEVVQFGPVMSMAIAERKRKAMVALTNYPVYIININAQ*
p5metav_104436p5metav_1044362F022152MSEQPGPKSTQGQLLWQLVQDMAEIKATVKMVIDHEERIRELEKARWQTAWITAFASAALTATAVAVMTQLIG*
p5metav_104885p5metav_1048852F037490MRTWEPLGSIGSPDRLDACVWALTDLSLNGYAKPQLTLAYTSAKGLS*
p5metav_105216p5metav_1052162F051561MSTDFDEEFDLLKALRESQALEMVEETESGWSTKVVPCALSQAAAKEIVQLRQEVNELRNRLAKVKS*
p5metav_105457p5metav_1054573F083929MKALKFTALLLLALVSYPIGIVYGAVVTCFRWATWLLMFDTERIGQSIYLIGVRMSTLLNATAATWLTAWLIVPGSDLKFGEYFPASAIIGKAHQLRHLSKVGQWVRAQLEYLDPGHCERAARRHGLIWK*
p5metav_105465p5metav_1054652F022152MSEQPGPKSTQSQLLWSLVQDMAEIKATVKMVMDHEERIRELEKARWQTAWITAFASAALTAAAVAIVTQMIG*
p5metav_105874p5metav_1058741F098766READGADHVRLDVERVPPERPPETYYFHPRCFERAQDWEAGL*
p5metav_105875p5metav_1058752F099972MPKANTGKRLLNLPQAAEYSSWAYQRGVEHGRREMQAEMMKALEALSAEAKKDLEKKLRDL*
p5metav_106454p5metav_1064544F099972MPKAINGKRLLNLPQAAQYFAWSYQRGVEHGRREMQAEMMKALESLSAEAKEDLEKK
p5metav_106806p5metav_1068061F010211MCLAMNWNDALVNIVGRTPPEDSLELRNSFIESVMTDQDGNKIQQAQLHLTMQEAMYRWEKDAIEKNITMRGMVRAPYNSGKSQQVPIGLSAYMTTRKHELETLIISADSRIAIKRILALRSLFAKDEYKYWCKTHNFDAVELDRTDTGSTQRIIVRSKNDTGNPTFEAHGVFTETAGQRAGVLILDDVCNDEDRVSRAHRENVWSKVSNIWIKRVHDRGIILSVSTPYHQDDANSRLKRSGMFNVLEIAVKEDKSGYECREWFRG*
p5metav_107483p5metav_1074832F035743VEGGQLPRPTSTTVLQILAFFFGTLSEIIKNYPNLFEGGGEESKGDVFGWLGLVDRLAGGRRQEWDAILEMPITEFLNTLAFHTTISKQRQKRLEKAAASGFESYVCACLNELL*
p5metav_107851p5metav_1078513F088532MQAHLKSAQDKENPTTEQETQALAGLLDAGVKAVGLRAVKDAASLLQKLEDATTPKEEMTDD*
p5metav_108682p5metav_1086822F066262MPNFEEIEAAILEVQQPRSRFQLERFVIGQHKTEEMQYYQTCLELQDMIYKYQSAKLNVQKQELKIKRLRETGDEMKELKAQELELGLKQTYIAMQGAEREMLALTEIFYS
p5metav_108960p5metav_1089602F013961MDIAAILSRKFEGSEWTLDGDDYAGLTWLSEGDAPTEAQLKKLWPTVQAEIEAEKQAVIDARLSAISKLEALGLTVDEVQAAFGLKA*
p5metav_109438p5metav_1094381F037490PLGSIGSPDRLDALVWALTDLMLGSYQKPKLQLVYSNAKGLR*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.