NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300003705

3300003705: Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome P72I A10 (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300003705 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0103008 | Gp0088354 | Ga0008094
Sample NameTropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome P72I A10 (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size5040885
Sequencing Scaffolds15
Novel Protein Genes17
Associated Families15

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available13
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameTropical Rainforest Soil Microbial Communities From The Amazon Forest, Brazil, For Analyzing Deforestation At Different Spatial Scales
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil → Tropical Rainforest Soil Microbial Communities From The Amazon Forest, Brazil, For Analyzing Deforestation At Different Spatial Scales

Alternative Ecosystem Assignments
Environment Ontology (ENVO)forest biome → tropical forest → forest soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationAmazon Forest, Brazil
CoordinatesLat. (o)-10.0Long. (o)-62.0Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000203Metagenome / Metatranscriptome1619Y
F001346Metagenome / Metatranscriptome718Y
F001758Metagenome / Metatranscriptome640Y
F001975Metagenome / Metatranscriptome609Y
F003497Metagenome / Metatranscriptome483Y
F007739Metagenome / Metatranscriptome345Y
F026580Metagenome / Metatranscriptome197Y
F039955Metagenome / Metatranscriptome162Y
F052605Metagenome / Metatranscriptome142Y
F056191Metagenome / Metatranscriptome138Y
F059694Metagenome / Metatranscriptome133Y
F062515Metagenome / Metatranscriptome130Y
F074109Metagenome / Metatranscriptome120N
F080954Metagenome / Metatranscriptome114Y
F081396Metagenome / Metatranscriptome114Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0008094_100272Not Available665Open in IMG/M
Ga0008094_101074Not Available744Open in IMG/M
Ga0008094_101127Not Available579Open in IMG/M
Ga0008094_101327Not Available661Open in IMG/M
Ga0008094_101827Not Available571Open in IMG/M
Ga0008094_102046Not Available566Open in IMG/M
Ga0008094_102210Not Available575Open in IMG/M
Ga0008094_102714Not Available990Open in IMG/M
Ga0008094_102758Not Available562Open in IMG/M
Ga0008094_103955Not Available558Open in IMG/M
Ga0008094_104524Not Available511Open in IMG/M
Ga0008094_104592All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia642Open in IMG/M
Ga0008094_105994All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia789Open in IMG/M
Ga0008094_107372Not Available621Open in IMG/M
Ga0008094_108101Not Available636Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0008094_100272Ga0008094_1002721F080954ERTFPATQEDEDSVEVEDSLRGANRGMQDSREAGTPIPGRAGDAKFGGRWSFVAG*
Ga0008094_100743Ga0008094_1007432F000203GVRHALFPALAIRRALVEGAASFPTLFSTASGVFGLVAGPSSVLRALNFE*
Ga0008094_101074Ga0008094_1010741F081396ERGLVADSKELEAGQEPRAGRSISGENDRASDRETLKITDEHDCDELDGRSGAERMMTSSAGSGERHLEEVKPRRGSSPIGG*
Ga0008094_101127Ga0008094_1011271F059694MEFAKARAVAGEEKAVASERFRFGEKAKAAGRLKAMKRKPEKPASGEQRDEAYGAPERGVRYGACPWRARLGIGS
Ga0008094_101327Ga0008094_1013272F056191LCEARVRHALTAEMSETFPSGGSMHASVKLKGIDGRAPQERVEHV
Ga0008094_101827Ga0008094_1018271F052605AEQAAASKIEVVCSGIIPGDRGKVGSGWLTRLLINRSASFGEAEFTSSSGDGRTSSNANEELGGEGRLETVPNRVK*
Ga0008094_102046Ga0008094_1020461F001346VKTFRKLGDIKNDTAELWKKSNLRVKRPDPWHQANALSKTVAVLAQEGEDVEKKLQPCLYLVRKPVAQPSVEAS*
Ga0008094_102210Ga0008094_1022101F026580SEVVQAGFELGRIAVTQRVSGCYCVLARANDSGGLHSEVSQRKDAERRDKVSVRTGKDTRSRQDP*
Ga0008094_102714Ga0008094_1027141F039955MGFFAALDSWLESLGRKTEDDSGFIQVIQYGSTKSYTFRRDVVRGNFLLPEIPDQGILIAVLRATQQFYLPDLSDEDFDNLHQMLILIDDVILGGLKDPSNWVLPRGFSDIPFVKSRLDKNYPIEQILEYMLAATRLYVWLYQHESETVSELIPHLLELEESFESLRTRNGVVDSSQGSALKY*
Ga0008094_102758Ga0008094_1027581F007739KSKINEVRFKIIPGDWGKVRSGWLARLLLNRAARHGSGGRIHQFLWRCSRTVKMRMRDLAARSD*
Ga0008094_102758Ga0008094_1027582F062515MLKTTPLDCETKGSLRVKRRDPWLGANAPSKTVADPKLVVKTR
Ga0008094_103955Ga0008094_1039551F003497PLPDRHARSKHSSQRSGDVSLLLPVTALIPLRIGAPKPIRLVYLLEAYASEQPFARPQRLLSFESHRGKVSAPDLSLRRNSELFFQPVRPCTPTLDSVFRASRDARRTKPVAVSQAQNSQTSIQLSLPFGTFVPPDRSAQSAARSEKLTLVPGPFSLRSPKASITVNNYPPSDHRSRFATVHQAY
Ga0008094_104524Ga0008094_1045241F001758VTGERLSQAGWLIPSKAGSQGSGEEAEFTSSSGDVRASSVNAKKGLSDEGR*
Ga0008094_104592Ga0008094_1045921F001975KMASTSTQQELQDQFLSIVRKSQEIALDAIKSMVDTVQTIAPKIPSVDLPFAERLPKPQDVVAGGYDFAEKLLSSQRKFADEVVKATAPLLPGNGDSK*
Ga0008094_105994Ga0008094_1059941F001975MPSTTTSTQQELQDQFLSIVRKSQEIALDAIKSMVDSVQTITPKIPSVDVPFADRLPKPQDVVASGYDFAEKLLSSQRKFADEVVKAAAPLLPGNGDSK*
Ga0008094_107372Ga0008094_1073721F039955LGSKSEEQSVTIVQYGSTKSYTFRREAVMRGSFQLPELPDQGSAIAVLRATQLYYLPDLADEDFDNLSQMLILIDDVILAGLKDPTNWILPRGFSESPFVKQRLDKNYPIEQILATILTATRLYVWLYRNDEAVAELIPHLLELEESFESLRTRVCESNGMSRYAGNG*
Ga0008094_108101Ga0008094_1081011F074109MDRLGTWEVPLTSTCERTGRSGRRLNNGPGPEVPSDLPGAQAAKHEARRIAWTPEAKQISDRICVAGSRSTSIVPVTSGNRTHRDPIEESGVPCGEN
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