Sample 3300003719

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300003719

3300003719: Ferric microbial mat communities from Yellowstone National Park, Wyoming, USA - One Hundred Spring Plain (OSP_B) (Metagenome Metatranscriptome)

Overview

Basic Information
IMG/M Taxon OID	3300003719 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0067861 \| Gp0093341 \| Ga0040881
Sample Name	Ferric microbial mat communities from Yellowstone National Park, Wyoming, USA - One Hundred Spring Plain (OSP_B) (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	21071026
Sequencing Scaffolds	11
Novel Protein Genes	13
Associated Families	11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	8
All Organisms → Viruses → Predicted Viral	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater lake biome → freshwater lake → microbial mat material
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	Yellowstone National Park, Wyoming, USA
Coordinates	Lat. (^o)	44.376	Long. (^o)	-110.69	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008949	Metagenome / Metatranscriptome	325	Y
F011097	Metagenome / Metatranscriptome	295	Y
F021133	Metagenome / Metatranscriptome	220	N
F030159	Metagenome / Metatranscriptome	186	Y
F035135	Metagenome / Metatranscriptome	173	Y
F063848	Metagenome / Metatranscriptome	129	N
F069056	Metagenome / Metatranscriptome	124	N
F071411	Metagenome / Metatranscriptome	122	Y
F075083	Metagenome / Metatranscriptome	119	N
F083455	Metagenome / Metatranscriptome	113	Y
F090627	Metagenome / Metatranscriptome	108	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0040881_100348	Not Available	1122	Open in IMG/M
Ga0040881_104541	Not Available	1014	Open in IMG/M
Ga0040881_105451	Not Available	627	Open in IMG/M
Ga0040881_107200	All Organisms → Viruses → Predicted Viral	2767	Open in IMG/M
Ga0040881_108384	Not Available	979	Open in IMG/M
Ga0040881_109448	Not Available	670	Open in IMG/M
Ga0040881_111521	All Organisms → Viruses → Predicted Viral	3380	Open in IMG/M
Ga0040881_115295	All Organisms → Viruses → Predicted Viral	1384	Open in IMG/M
Ga0040881_115937	Not Available	533	Open in IMG/M
Ga0040881_122158	Not Available	922	Open in IMG/M
Ga0040881_122159	Not Available	780	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0040881_100348	Ga0040881_1003481	F063848	KKRSVHDPTLSVIHYQEQLEKMSKAFEKSSTRRNQRAVNGFTVLKQVQNTVRDYLNEVSASMKAPVIAQLAVEFIGIAMAYLKGSNEGYNSYALTGRVAQIATLRATHIVHATTLTCAQVGEIINGMLKKLSGVTADPLTFTENDGVCEAKVANPLTKLSVASAGTGLTVALTDILKAKTPEEVLMAK*
Ga0040881_104541	Ga0040881_1045412	F071411	MSEDDKMLYRMKNMADIRTELEKHIDNIAEQLIAQQLEDNLQDVIDDAIDAQLYIDLSTKEPVGFDIGIVIGGPNIRLIYNRGACQLRGWWGSLNDIKDVDNEICETILDYLTEIYRQ*
Ga0040881_105451	Ga0040881_1054512	F075083	MDLAEMPETESQKQIQKQKLIDSLGELDIDFEKGEDTIRIKGLAGYVYPGHIIVYQIPDKKVVFEEFGDVNRIILNSTDETNPGIKQILLDKSVYARYDFPYLIVQF*
Ga0040881_107200	Ga0040881_1072003	F008949	MSSQTVKLGTQTITPKVQDLGNSYYIEFQVNITKYLNNPVNHTMDVKFSCNKYKQVVVPSANPLSSPTVQTVQKTIQECVDEWFDQHKSVYEVA*
Ga0040881_108384	Ga0040881_1083842	F071411	MSEDDDKMLDTMINSADIRTELEEHMDYIAKLLKDNLQDVIDNAIDVQLYINLPDKEPVGFDIGIVFGGPNIRLVYSRGACQLRGSWGSLTDEKDIDNEICETVLDYLTQTLSSRGEK*
Ga0040881_109448	Ga0040881_1094481	F021133	QIYENGNHAIKKICEMEPDDKMANFSATDCIIGTANTHLALKIAKEKGYPPDVIEYLENQSRQEQWHCQLQIGKPPKPYDFVVAQKHREILLKHGIYVWMGVMQLLGEKIALAKAICWRRNDDPHFVNKFATVDEYYHTTYPLLLLSKYASEEELEKIVELQKEYIVNIFKIKEGI*
Ga0040881_111521	Ga0040881_1115214	F069056	MSEPKVDMNKVIMSSIVNIKPQPDNTTEVYLSLSRLFNEIMKVREGFSVYKIVVDETKVYVYINVPTNLFGDLQSLIQDAQTRMTILKKSILTMMGDLRQIGYVKDIIQQNDDGIIVIAINSTVTPTSPGVPNAPTW*
Ga0040881_111521	Ga0040881_1115215	F090627	MHLPGRLSIGINGYVRVMLNGKVIYDDTNAITTQFLQYLQNMLQGTVPTITSIYVLAKPNGTPINLNNLTFQNNYQQVNMIFLNQYVPQPIEALELWISTSVGNYPVAVLQFQSPITQSGELAVQWTISIQVPLIVQGAETFGISDSIPQILMQLFVPQQYFSTPIQLTSTQPTLQIVSTPQVTPTFIAPSEAGVGAVAYITTSSTISTLSALLYLLGQYIMTVSQNNLNEQAVNSLIIASAFITLTSSNITSVVP*
Ga0040881_115295	Ga0040881_1152951	F030159	YIIPITLPPRPDWGGISSMRMKVLYVAPIFHQFQGYGGLSFAWTRDSVEIPFYPEMGTCRPYLTTLPDGKLKVTMGGYHSDNYIDGVAIYLDKSVISPKGKTLVTSPSLIFGQTSPGGSYYVISESPSSTNIIYQGVVTYTFGKKYARVYLNLNANNWGFVNIYTRYRSRSAPDLQQMYGQTPNPNNTSAYYPVVERNFGSLVYLSDYAYGMPFALEYPRTSRFRVDDQVLWVITTNSTSPVWVELEGD*
Ga0040881_115295	Ga0040881_1152952	F011097	MLRDVVLYTSGGTDPFTSLTTGGSPITGNSSNYQFLRFHPNYARLHIYITGLSGTSPSIQFTVGTVAGSNNYTLPPITSPIYIYVIGNENRTIITYLNTSSQVLQQVELPYNVFLNGVSVSWSVAGTSPSITAYIHFEFEDEEEGEE*
Ga0040881_115937	Ga0040881_1159372	F035135	MTYVNEEFTTPLRQKRIHIIPRSIKYGQQFITSFFFDVXDDDEYQYIIFTFLMKNAFRIYLNIWREQRKFISYLKTFKNEFKNAFDYYQLLLITTKERIYQTTHTIACFFDFENDIHEILTIYVNELFCNYV
Ga0040881_122158	Ga0040881_1221582	F083455	MHVDLFSYRLGISSLLAKDVIIALLGTALAVSLTLANKKGESLLIQSTMMMPVAFAIHALPHINYISLNTIFDDGIIATGISLVLDYITTKAERPDLKYRFINMYILLTLYAIIKYPSDVLEFALNSVLMTIAFALITYIPPVDDIL*
Ga0040881_122159	Ga0040881_1221591	F083455	SSLLAKDVIIALLGTALAVSLTLANKKGESLLIQSTMMMPVAFAIHALPHINYISLNTIFDDGIIATGISLVLDYITTKAERPDLKYRFINMYILLTLYAIIKYPSDVLEFALNSVLMTIAFALITYIPPVDDIL*

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