Sample 3300003723

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300003723

3300003723: Hypersaline microbial mat communities from Yellowstone National Park, Wyoming, USA - Beowulf (BE_B) (Metagenome Metatranscriptome)

Overview

Basic Information
IMG/M Taxon OID	3300003723 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0067861 \| Gp0093333 \| Ga0040873
Sample Name	Hypersaline microbial mat communities from Yellowstone National Park, Wyoming, USA - Beowulf (BE_B) (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	7794074
Sequencing Scaffolds	8
Novel Protein Genes	8
Associated Families	7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	7
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	aquatic biome → hot spring → microbial mat material
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	Yellowstone National Park, Wyoming, USA
Coordinates	Lat. (^o)	44.376	Long. (^o)	-110.69	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F026046	Metagenome / Metatranscriptome	199	Y
F026606	Metagenome / Metatranscriptome	197	Y
F042425	Metagenome / Metatranscriptome	158	N
F048414	Metagenome / Metatranscriptome	148	Y
F053392	Metagenome / Metatranscriptome	141	N
F056380	Metagenome / Metatranscriptome	137	N
F092365	Metagenome / Metatranscriptome	107	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0040873_102572	Not Available	1164	Open in IMG/M
Ga0040873_102969	Not Available	1689	Open in IMG/M
Ga0040873_103006	Not Available	998	Open in IMG/M
Ga0040873_103089	Not Available	1400	Open in IMG/M
Ga0040873_103345	Not Available	631	Open in IMG/M
Ga0040873_104184	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	596	Open in IMG/M
Ga0040873_104488	Not Available	591	Open in IMG/M
Ga0040873_105767	Not Available	672	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0040873_102572	Ga0040873_1025723	F053392	MSVPSYVTLTGPQTTVMPASFNIAASAAAGSVIQGSILAFGPQSPAVAAPQVPITEVWSVIDLYIIGTVTPDALLSIYINGYPQDINPDLNSLNLNNLTRWKLMQALKLPPASTWFTTITLLGANGASAQTYTVYFSVIRAPYLPSASSK*
Ga0040873_102969	Ga0040873_1029692	F048414	MNFEKLKENASTSLFYSFLLFIVSFILVIAGLNYVWGRPALIWLPLGIWNLLITLGIFLSIMIILVIAVRRLL*
Ga0040873_103006	Ga0040873_1030062	F053392	MSVPSYVTLTGPQTTVMPASFNIAASAAAGSVIQGSILAFGPQSPAVAAPQVPITEVWSIVDIYIIGSVTPDALLSVYINGYPQDINPDLNSLNLNNLTRWKLMQALKLPPASTWFTTVTLMAANGSSAQTYTVYFSVIRAPYLPSTSSK*
Ga0040873_103089	Ga0040873_1030891	F026046	LLEIYEGYLNKPTCNALNNIRIGRDGKGYRKLRKEDIPIEWINYAKKHGIKVRDRTLIIGDALDPVDVNCIPVMNAFYPQTSSGKWCCTPAIAQYTNNGDQTPTQVCFSAGGNNAIYIPYFGIALIDANGNLDLLMDTNNYISNATPNFIQPSVTSPSKVCGSQQYNGSIYMSFAGIPTTTMTISTAYLLIGTNTLASGGVFSTVIEWTGINYKPTVNFPLTINIYLSVS*
Ga0040873_103345	Ga0040873_1033451	F056380	VPATEAPGEANNDAAESPEEHENMGGETDRLYVTVQVIIAAMPLLTISSVVLLVVFSIQAIRYHSPFMTFLALWFLVLGSQACILFESHRVGEKMAEHCCDGTDNSANITLWSILSITFFVLSTIFIWREPTFTGRFGTIGLYIDAVTVTLMVFLSIIWLLDTAYMINEVMPIRVD*
Ga0040873_104184	Ga0040873_1041841	F026606	MIEENEYEKIEQKLEKFLSIDVGELREKIIEKAVWLNKDYSKMVVLRIYHDGSYDIGIGQEGSHDGLSSKERLWIEFSLIEPWDLDEYENVFESEDGYIDQDTEEEYKNDDEFLEAVRISVTSGFYDDFEYEWEKFLKEFDEWYEALKGNGE*
Ga0040873_104488	Ga0040873_1044881	F042425	MVICMSKPEVNEPCTGQCQLEHRLTAIEYSLKELNMKVDLLTSNVKSQADDSKRYAKVAVYISLTSLAVLASVLLAVLVK*
Ga0040873_105767	Ga0040873_1057671	F092365	LGERSLRILDNQLGLRILIFISPMTRSYEIFWQDIHGRFIKKLDSIKVCSIFSVAYCESTYSSRNMLIDIMKCRDIHVGILKTLVPIPSEVYNAYAYARATGDYREYYKLVKDILTELRGKLEDEIDEMIKFNYAEMTNIITNFFNSQLLEYGAEIGNWITGNPLYEEHRLYGQYCHNCFNPVCNDIERVVITEKAVVVRK*

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