Sample 3300003734

Basic Information
IMG/M Taxon OID	3300003734 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0046785 \| Gp0088398 \| Ga0008279
Sample Name	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_153SG_22_RNA (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_153SG_22_RNA (Metagenome Metatranscriptome)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	36486380
Sequencing Scaffolds	31
Novel Protein Genes	32
Associated Families	26

Dataset Contents

Total Genome Size

36486380

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	5
All Organisms → cellular organisms → Bacteria	2
Not Available	12
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	4
All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Pontimonas phage phiPsal1	1
All Organisms → cellular organisms → Eukaryota	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	2
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → Viruses	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → Viruses → Predicted Viral

All Organisms → cellular organisms → Bacteria

Not Available

All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.

All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Pontimonas phage phiPsal1

All Organisms → cellular organisms → Eukaryota

All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium

All Organisms → cellular organisms → Bacteria → Proteobacteria

All Organisms → Viruses

Ecosystem Assignment (GOLD)
Name	Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Ecosystem Assignment (GOLD)

Name

Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Type

Environmental

Taxonomy

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → coastal inlet → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

marine biome → coastal inlet → sea water

Earth Microbiome Project Ontology (EMPO)

Free-living → Saline → Water (saline)

Location Information
Location	Saanich Inlet, British Columbia, Canada
Coordinates	Lat. (^o)	48.6	Long. (^o)	-123.5	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Saanich Inlet, British Columbia, Canada

Coordinates

Lat. (^o)

48.6

Long. (^o)

-123.5

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F002434	Metagenome / Metatranscriptome	559	Y
F006699	Metagenome / Metatranscriptome	366	Y
F007118	Metagenome / Metatranscriptome	357	Y
F011942	Metagenome / Metatranscriptome	285	Y
F012459	Metagenome / Metatranscriptome	280	Y
F017142	Metagenome / Metatranscriptome	242	Y
F018545	Metagenome / Metatranscriptome	234	Y
F020141	Metagenome / Metatranscriptome	225	Y
F020542	Metagenome / Metatranscriptome	223	N
F020701	Metagenome / Metatranscriptome	222	Y
F024092	Metagenome / Metatranscriptome	207	Y
F027530	Metagenome / Metatranscriptome	194	Y
F031107	Metagenome / Metatranscriptome	183	Y
F035550	Metagenome / Metatranscriptome	172	Y
F038705	Metagenome / Metatranscriptome	165	Y
F049593	Metagenome / Metatranscriptome	146	N
F051164	Metagenome / Metatranscriptome	144	N
F056627	Metagenome / Metatranscriptome	137	N
F059656	Metagenome / Metatranscriptome	133	N
F060949	Metagenome / Metatranscriptome	132	N
F061887	Metagenome / Metatranscriptome	131	N
F071292	Metagenome / Metatranscriptome	122	N
F077334	Metagenome / Metatranscriptome	117	N
F083737	Metagenome / Metatranscriptome	112	Y
F089163	Metagenome / Metatranscriptome	109	N
F100391	Metagenome / Metatranscriptome	102	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0008279_1001887	All Organisms → Viruses → Predicted Viral	1487	Open in IMG/M
Ga0008279_1003015	All Organisms → cellular organisms → Bacteria	2319	Open in IMG/M
Ga0008279_1003502	Not Available	849	Open in IMG/M
Ga0008279_1004276	Not Available	514	Open in IMG/M
Ga0008279_1005895	Not Available	930	Open in IMG/M
Ga0008279_1007541	All Organisms → Viruses → Predicted Viral	1695	Open in IMG/M
Ga0008279_1007624	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	2096	Open in IMG/M
Ga0008279_1007967	All Organisms → Viruses → Predicted Viral	1404	Open in IMG/M
Ga0008279_1008896	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	968	Open in IMG/M
Ga0008279_1008966	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Pontimonas phage phiPsal1	630	Open in IMG/M
Ga0008279_1011152	Not Available	892	Open in IMG/M
Ga0008279_1012539	Not Available	944	Open in IMG/M
Ga0008279_1012975	All Organisms → Viruses → Predicted Viral	1658	Open in IMG/M
Ga0008279_1013656	All Organisms → Viruses → Predicted Viral	1860	Open in IMG/M
Ga0008279_1014735	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	586	Open in IMG/M
Ga0008279_1015668	Not Available	858	Open in IMG/M
Ga0008279_1016238	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	549	Open in IMG/M
Ga0008279_1017990	Not Available	554	Open in IMG/M
Ga0008279_1018224	All Organisms → cellular organisms → Eukaryota	1300	Open in IMG/M
Ga0008279_1018606	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1543	Open in IMG/M
Ga0008279_1019405	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	1490	Open in IMG/M
Ga0008279_1024469	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	648	Open in IMG/M
Ga0008279_1024871	All Organisms → cellular organisms → Bacteria → Proteobacteria	673	Open in IMG/M
Ga0008279_1026043	All Organisms → Viruses	1174	Open in IMG/M
Ga0008279_1027991	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	959	Open in IMG/M
Ga0008279_1029293	All Organisms → cellular organisms → Bacteria	525	Open in IMG/M
Ga0008279_1030813	Not Available	562	Open in IMG/M
Ga0008279_1033560	Not Available	561	Open in IMG/M
Ga0008279_1034483	Not Available	995	Open in IMG/M
Ga0008279_1035186	Not Available	602	Open in IMG/M
Ga0008279_1037034	Not Available	502	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0008279_1001887	Ga0008279_10018873	F056627	MANIKVVEQEIAKIEERSTARQIEAAKLLTNAMAGDIRAKVMLQEGISSSDIPTVLEPAINVIFLAQYAAEQNVWNQIADEYQTDNFGVIRFGDFQVDPSDLTSNAGEEFISGGLPKVGEYEEYPAVSFTTTQLDKDFDGKHGVRARMSWESLRRTGNFDMIGQMTAKFAQYAARQEDLALAKLFV
Ga0008279_1003015	Ga0008279_10030152	F007118	MALDVTGLTDFNNEVAGELLVKSVYGGSTMEYITVKEGVKHQEPINLMEVDLQIQSGTCVSNPSGSLTFTQRDITVCPRTSFDGICLKDMDKKYLGIADLEPGSYNETFALASNYSELLTSNFQKKNDQFLWAGDQAGCDAAYGLVTIISGSTAGVVVPVGSGSQAITAATALDVMDDMIVNLSSDVADREDITFFMGVDDFKKYVVALRSANNFYFDPASIENRGGILEMAYPFNPGVKVVGTVGLNGTSRVVLGPAKQIVAGTDLMSDFSEFQLWYDINSDQLKHRISTKLGVNIAYPEFWVSNDQ*
Ga0008279_1003502	Ga0008279_10035022	F059656	MSTKIKVVNFIAAILLTLSCSSNHCKSTVCPENFTCEDGQCVCDEYHTGNNCEIELRETFYGTFTGIMNVYNEDFVLINSIEKSITVKDSTSDPTIMAIDDLVAFIDSRTLSFIFSIAKQDTSTNIQTEIRGYGGLVNGELDYNYTETTQSVGPNLFPVIYKHYHFIGTR*
Ga0008279_1004276	Ga0008279_10042761	F049593	MDKELQDYYETLLDLFASKGWKQYIEDISDNMDILQDITTIPDEKQFWFRRGQIEAVQRVLSYESAIKNSYEDFEREVNA*
Ga0008279_1005895	Ga0008279_10058951	F006699	HIEEQWVDSSDAFATCPECGNTAQRIISPVSTKFEGVGWPDADDKWARDHERAAQK*
Ga0008279_1007541	Ga0008279_10075412	F007118	MSLDVSALSAFNNEVAGELLPKIVYGGSTMEYITVKEGVKHQEPINLMEVDLQVQYGTCVSTPSGSLTYSQRNITVCPRTSFDGICLKDMDKYYLGVADLEPGSYNTTFKTAQVYSDLLVNQFQKSNDAFLWNGDAGCTDGGTGLIATISGSTAGVVTAGTGDATLANLDTMIAALSDDVADREDITVFMSVSKFRTFIAALRSANNYYFDPASVSNRGGILEIAYPFAPGVKVVGVSGLNGSNRIVVGPAKQIVAGTDLMSDFSEFQLWYDINTDQLRHRIATKLGVNIAYPEFWVSNDLA*
Ga0008279_1007624	Ga0008279_10076242	F007118	MALDVTALNDFNNEVAGELIAKMVYGGSTMEYVTIREGVKFQEPINLMEVDLQIQTGTCVSTPSGSLDFSQRNITVCPRTSFDGICLKDMDRTYLGISALERGSYNETFALATNYSELLVNQFQKSNDSFLWTAVSGSSPSGCSSDGLKTIISGSTAGVVTAGTGDATLANLEVMLAALSDDVADRDDLTFFMSVSKFRSLISNIRTQNNFYFDPVSVQNRGGILEIGMPFQNAKIVGTTGLNGSSRIVLGPAKQIVAGTDLMSDFSEFQLWYDINSDQLKHRISTKLGVNVAYPEFWVSNDVA*
Ga0008279_1007967	Ga0008279_10079671	F006699	WSKLMLRRHDYKCLACEHVEEHWVTDDDRFVTCKECGETAQRIISPISTKFEGFGWPDADDKWARDHERAANTN*
Ga0008279_1008896	Ga0008279_10088961	F089163	LRQKNLADLTFVIKRLDSFKDIYDESLFPKAVEELKSKKLGKSFNEIQLIICSNYLLKPIEELIEENLIKKYSLNVKDWITNIDCDLDNDDDLIYMVHKFTFWTLFMTRSLLLIWDKKDLKNFPWENFLELNVLAKSIFFKTQKDVEQFIERNKSKTRIALFKRQGIFIESTFQNSLGYLKRLTNSINS*
Ga0008279_1008966	Ga0008279_10089661	F060949	HDLLTLSNTTATELTPGARHSGLDVTIQNVDETAIVYIGGSTVTTSDYGFKLDPGAGFSVELNPNDRLYAISDTNESNAALLRALLEDI*
Ga0008279_1011152	Ga0008279_10111521	F077334	MKKIIIIFIGILIWSCSGESSSDIQFEPEITAFNFEERLPKNIQNGAPLIYSQVMSMQGQINAMGLFMSNNGYMNKTTNKAKTNSDWSYGDFNVDHSYDLVGNQYQFYYTISYQGTVYYLIEGWQMVDGSSGYWDSKVDFEALGQGMKNIPDYTTELSWTSDADGLDMEISFDFGDTMQIFYEMTINNDDSGYFAYTLNGDLTYSALWYANGSGLWTNHLTTPSTVYTW*
Ga0008279_1012539	Ga0008279_10125391	F017142	FKTNKMNYSELTKLSIEELRILNKKVVEVIKIKKSETALNVKESLYVGANVSVNHPKLSGKQLRVEKINRTKAVLKVLNGYGTYTVPMNMISVNV*
Ga0008279_1012975	Ga0008279_10129752	F020141	MQFWEAIDYKNSRKVLVIPNITNSSNIEKDSFIDVIHNHIKALDNY
Ga0008279_1013656	Ga0008279_10136563	F024092	MGPFSEMKQLERKASVLALLQQNNLSEWARDYWGLVLDRITLDEARYNDRVVQLYKDRERQTGWINYE*
Ga0008279_1014735	Ga0008279_10147351	F018545	FRTYVTALRTANNFYFDPASIENRGGILEMAYPFSPGVKVVGTVGLNGSNRVVLGPAKQIVAGTDLMSDFSEFQLWYDINSDQLKHRISTKLGVQIAYPEFWVSNDEA*
Ga0008279_1014735	Ga0008279_10147352	F031107	MSCDITSGFTLGCRDNTGGIKNLYILSGSITSVTDVSEGLIETISGSGEFFKFELFRQTSDFS
Ga0008279_1015668	Ga0008279_10156681	F061887	GYYVAKVSFESTETKRNGDPVIHRSEFLVAAESVLEVETKVAEFLQGTTGFFETTQISKSKIEAVIE*
Ga0008279_1016238	Ga0008279_10162381	F018545	VTLANMDAMLAALSSDVADREDLTFFMSVQGFRTYVTALRTANNFYFDPASVDNRGGILEMAYPFSPGVKVVGTTGLNGSARVVLGPAKQIVAGTDLMSDFSEFQLWYDINTDQLRHRIATKLGVNIAYPEFWVSNDEA*
Ga0008279_1017990	Ga0008279_10179901	F012459	GKRGSVTIDNGQTLLQLIPVLLADEDPTVGVLTTGDYDIVLERDTSITDGNNGSDTLLAAGIVDGDHIICIDEPGGTKEVRQERKGRIASVKRHRDGKTAYTWNKDRLPNPYEGNAVNADDDENTGALVAQRPWS*
Ga0008279_1018224	Ga0008279_10182241	F020701	MASNLENGTSEIAPEQQAFSKSLRPIVGTCLAISALAAMALTSTSGISGAAPMASTTQLEVVKQGKQPIQAGCANIYGSDPDQVFIDPDTGLRVLTAVFTICDDRSLNGVALNALGFDHQNDIDIGLTYVETGPGCWLTLYDGPNFNGKTAVISPQTSMHLKHVGARNWNDLTRSLTTRASTGDGVALYLSHRVALGSVNDHCIAMYNANPETYPKADGLYLCGDRHEATTWHFDTMDIIEQGFNIDGTHFGIKYIMSGRKVKVEIYDGTTRNTINHGPLSMTGHETLDLSAIKYGDDDTWESKAKSFTIVEIA*
Ga0008279_1018606	Ga0008279_10186061	F027530	NNFPNFPLVDPGLDVRIIDGSSSQTLDQLYFVGTTNNYVTKVAPREVSTYSSYGNFWTKQVSVQDQFRDILDGGDSANGTSQFTGPVIGGEFPTKGSLLNQT*
Ga0008279_1019405	Ga0008279_10194051	F007118	FNNEVAGELIAKMVYGGSTMEYVTIKEGVKFEEPINLMEVDLQLQNGTCVSTPAGSLDFSQRNIKVCPRTSFDGICLKDMDRTYLGISALERGSYNETFALATNYSELLVNQMQKKNDQFLWAAVSGSEPAGCSSDGLKVLISGSTAGVVTPAGQTALTGSTALTQLDTLIEAIPSDVADRDDLTMFMSVTNFRKFVSGIRSSNSYYFDPNSISNRGGILEMVYPFQNVKVVGTVGLQGSERIVVGPAKQIVAGTDLMSDFSEFQLWYDINTDQLKHRISTKLGVQIAYPEFWVSNELA*
Ga0008279_1024469	Ga0008279_10244691	F020542	FLWSCERPDDFRSNDPRDVVGSNATTPRLQIAPFPNLDSYWIYRGSYWLGKHEWHRITDSIWYQKDTAISIQEDITGVASTHTYKLLRVLRRDVVDWVGQRDPKGALHSPESQVFLYPRNQFVRIDDEGRWISLMIWISPTGLQKWEQVLMDVGLPIGTPWVEDYRVTETDTVIIDDRWAVRVSLREPYRTSGVDWIEGIGPTQNSLLPGYDGWQ
Ga0008279_1024871	Ga0008279_10248711	F002434	ESHDKLIRAFQEYFKWQDKFEYSGSDAAGIKARYWLSEIRNFSSIRRNEIQAKRQDRKATRKGIVGRPKKVSSVDEDKPNMDLPE*
Ga0008279_1026043	Ga0008279_10260431	F035550	MEKQILTGLMALIIGLAGWNLKTTYDLSIAVSNMQVSHADKQSIQDMKLAIQRLELLLLQDASVK*
Ga0008279_1027991	Ga0008279_10279911	F020542	FLLALLFLWSCERPEDFRSNDPCDIVGANATTPRLQIEPFPNMDSYWIYYGSYWWGKHEHHRITDSIWYQKDTVISIQEDITGVASTHTYKLLRVLRRDVMDWVGQRDPKGVLHSPESQVTIYPRNQFVRIDDQGRWISLMIWISPTGLQKWEQVLMDVGLPIGTPWVEDYRVTETDTVIIDNRWAVQVSLREPYRISGVDWIEGVGPSRNSLLPGYDGWQTTYFLKKHFIY*
Ga0008279_1029293	Ga0008279_10292932	F083737	MTKARDLANYVSAGTVDSTELGYLDGVTSNIQDQLDNISVTS
Ga0008279_1030813	Ga0008279_10308132	F038705	MKTGRYQQVKPVQPAKKTGERKTPLSQPGSKGYNQKTMEGSKAFYSGTGGKY*WLVIDIK
Ga0008279_1033560	Ga0008279_10335601	F100391	SSWLVSPDCNTEDMFDDSFPEDLKPKVAAPLETLSVDSIPVDYDLDPKMLQAITDYLNKQDLDWIKSNEEIVRKLLVSHSHLRDLLAEGPLQLEVPEFSLESVDRDACVLLSMFFEAYGVSGYDPDRLDDAALGGMTELRTLALGHESLFQSVHKSFCLHFDVLSEVSLGGPPSFSEMDDPCLINAK
Ga0008279_1034483	Ga0008279_10344831	F071292	FYPVGICDNLILAKQYAQREYKERAKSHRIRVFKKMMNAPQMMEDKIVYEL*
Ga0008279_1035186	Ga0008279_10351861	F051164	KNIFFILILFLSSHTVFGQWEKQFYVDENGVPTKDSYESLSARGSFSNAQTKNQEASYIFIKDEASITVKIFEYNTEVPSTSQASFQDVVLTKPDGNIAKIKRVFFTKKGALFFSKGKFCEKDQICLWHLLESWIVNKDKFADFNKQTQTPGDYTMLFDRAIGDEKSNYTVNFTLN*
Ga0008279_1037034	Ga0008279_10370342	F011942	MGPEEYHYLEKFNNEYFKNIREVRISSLYWIWDSINSKNPTIRTSVVIELIPYTSLVELLSELEDEERYEDCKVVFDIMKIYK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300003734: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_153SG_22_RNA (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences