NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300003907

3300003907: High solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-10-D



Overview

Basic Information
IMG/M Taxon OID3300003907 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0110114 | Gp0088370 | Ga0008111
Sample NameHigh solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-10-D
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size64688348
Sequencing Scaffolds15
Novel Protein Genes19
Associated Families2

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available15

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameIonic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa
TypeEngineered
TaxonomyEngineered → Lab Enrichment → Defined Media → Unclassified → Unclassified → Ionic Liquid And High Solid Enriched → Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationJoint BioEnergy Institute, California, USA
CoordinatesLat. (o)38.5402Long. (o)-121.75Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010514Metagenome302Y
F038929Metagenome / Metatranscriptome164Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
JGI26058J51888_1004115Not Available1414Open in IMG/M
JGI26058J51888_1005753Not Available1080Open in IMG/M
JGI26058J51888_1007913Not Available867Open in IMG/M
JGI26058J51888_1008094Not Available853Open in IMG/M
JGI26058J51888_1009989Not Available738Open in IMG/M
JGI26058J51888_1010468Not Available714Open in IMG/M
JGI26058J51888_1010754Not Available701Open in IMG/M
JGI26058J51888_1010832Not Available698Open in IMG/M
JGI26058J51888_1012822Not Available621Open in IMG/M
JGI26058J51888_1013260Not Available608Open in IMG/M
JGI26058J51888_1014084Not Available585Open in IMG/M
JGI26058J51888_1014286Not Available579Open in IMG/M
JGI26058J51888_1014507Not Available574Open in IMG/M
JGI26058J51888_1014854Not Available565Open in IMG/M
JGI26058J51888_1016174Not Available536Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
JGI26058J51888_1004115JGI26058J51888_10041151F010514VPNSVHTRPGQENSDKNSKKIQKIIKPLPGIIFSQNGMR*
JGI26058J51888_1005753JGI26058J51888_10057531F010514LLKRDEIGRKRENKILYPISIHTRPGKENSEKNSKRIQKFIKPLPXNIFSQNWMR*
JGI26058J51888_1007913JGI26058J51888_10079131F010514NILVPNSVHTRPGQENSENNSKKIQKIIKPIPDIIFTQNGKI*
JGI26058J51888_1008094JGI26058J51888_10080942F038929FKTKRVRTGRKIENEKNFLPIRSNPTRVRKFKNKCKKILKIKKHHPEFISRPYGPG*
JGI26058J51888_1008470JGI26058J51888_10084701F010514ILVPNSVHTRPGQENSEENSKKIQKIVKPLPGIIFSQNGMR*
JGI26058J51888_1009989JGI26058J51888_10099891F010514GRKSENKILVPNSVHTRPGQENSEKNSKKIQKIIKPIPGIIFSQNGKI*
JGI26058J51888_1010468JGI26058J51888_10104681F010514KILVPNSVHTRPGKKNSEKNSKKIQKIIKPHLSIIFSKNGMRYAEKEKKKI*
JGI26058J51888_1010754JGI26058J51888_10107541F010514LPKRDEIGRQSEHKILVPNSVHTRPGKQNSEKNSKKIQKIIKPIPGIIFSQNGTRLADKMNTKF*
JGI26058J51888_1010832JGI26058J51888_10108321F038929VRTGRKIENKKNFLPIRSNPTRVRKFKYKCKKILKIKKHHPGFISRRNGPRQAEK*
JGI26058J51888_1012822JGI26058J51888_10128221F010514MGQKKENKILVPNSVHTRQVQENSEKNSKKIQKIIKPLPDILFSKNGMR*
JGI26058J51888_1013260JGI26058J51888_10132602F038929MQKNFKNLKTSSRLHFMMIRVRKGRKIENKKNFIPIRSNPTRVRKFKNKCKKILKITKHHPGFISRPNGSGQAEK*
JGI26058J51888_1014067JGI26058J51888_10140671F038929DQDRMKIENQNNFLPIRSNKTQVRKFKNKXKKILKIKKHLPGFISRRNGSGPAEI*
JGI26058J51888_1014084JGI26058J51888_10140841F038929KRVRTGRKIENKKIFIPIRSNPTRVRKFKNKCKTSLAIKKHHPGFISGRNGSGQAKK*
JGI26058J51888_1014286JGI26058J51888_10142861F010514DRNREKKIIVPNSVHTRPGQENSEKNSKKIQKIIKPLPCIIFSQNGMR*
JGI26058J51888_1014507JGI26058J51888_10145071F038929MKRVRIGRKIEKKKNFIPIRLNPSRVTKFKNEGKKILKIKKHHPGFIS*
JGI26058J51888_1014854JGI26058J51888_10148541F010514ENNILVPNSVHTRPGQENSENNRKKIQKIIKPILGIISSPNGMR*
JGI26058J51888_1016024JGI26058J51888_10160241F010514KKKKILVPNSVHTRPGQENSEKNSKKIQKTNKPLSGINFSQNGMR*
JGI26058J51888_1016174JGI26058J51888_10161741F038929KTSSRLHFNMKRVRIGRKIEKKKNFILIRSNPTRVKKFKNKCKKILKIEKYHLGFISRRNGSGQATK*
JGI26058J51888_1016676JGI26058J51888_10166761F010514LPERDEIGRNREKKIEVPNSVHTRPGQENSEKYSKKIQKIIKPFFGIIFSKNGMR*
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