NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300004331

3300004331: Sediment microbial communities from the mangroves in Sao Paulo State, Brazil - MgvRC2C



Overview

Basic Information
IMG/M Taxon OID3300004331 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0110188 | Gp0091625 | Ga0066232
Sample NameSediment microbial communities from the mangroves in Sao Paulo State, Brazil - MgvRC2C
Sequencing StatusPermanent Draft
Sequencing Center
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size28768163
Sequencing Scaffolds10
Novel Protein Genes10
Associated Families9

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available7
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi2
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMetatranscriptomics Studies In Sediment Microbial Communities From The Mangroves In Sao Paulo, Brazil
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Oceanic → Sediment → Mangrove Sediment → Metatranscriptomics Studies In Sediment Microbial Communities From The Mangroves In Sao Paulo, Brazil

Alternative Ecosystem Assignments
Environment Ontology (ENVO)mangrove biome → intertidal zone → sediment
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Sediment (saline)

Location Information
LocationSao Paulo State, Brazil
CoordinatesLat. (o)-23.8553Long. (o)-46.1394Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001024Metagenome / Metatranscriptome803Y
F001346Metagenome / Metatranscriptome718Y
F001758Metagenome / Metatranscriptome640Y
F007847Metagenome / Metatranscriptome343Y
F011154Metagenome / Metatranscriptome294Y
F011719Metagenome / Metatranscriptome288Y
F043157Metagenome / Metatranscriptome157Y
F054015Metagenome / Metatranscriptome140Y
F082867Metagenome / Metatranscriptome113Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0066232_102077Not Available794Open in IMG/M
Ga0066232_102171Not Available782Open in IMG/M
Ga0066232_102219All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi777Open in IMG/M
Ga0066232_102656All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi728Open in IMG/M
Ga0066232_103438Not Available667Open in IMG/M
Ga0066232_103499Not Available663Open in IMG/M
Ga0066232_103572Not Available659Open in IMG/M
Ga0066232_105475Not Available570Open in IMG/M
Ga0066232_105607Not Available566Open in IMG/M
Ga0066232_106228All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium545Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0066232_102077Ga0066232_1020771F082867ITVQYRVVKPLTFTSNSLLLAVNPTLTDLSNTLASIYRQYRVTELSFTFQASDVAGAYALAMQYVPQVGGSPSAPPTTLSEFEGPAVGYCETGRGREYTFTVPSHVLNAMGLNYYSTRTNVSPSQDPDVITQGLMVFLTSTPTTPIIAYMHVKFEFQTLEDPSFLANLVNREENEAKDSIIVPRVTKSPGGELWN*
Ga0066232_102171Ga0066232_1021711F007847VKRAERPHSKSSRRKALDGPATRPKTPLAVENSVGKLAAAERQMPAWER
Ga0066232_102219Ga0066232_1022192F043157MRILDERFRNYICLNIYDRIDSMKMLGELIMIKGANSLERRIR*
Ga0066232_102656Ga0066232_1026561F043157MRILGEHFRDCICPNIYHRIDSMQMRGELIMIKWAKSLERRIR*
Ga0066232_103438Ga0066232_1034381F054015LPLCASTVPVTLAVPRERDLPNERRPTAGQSEHARREGHEVSAGSVKTFRNVGDVEMSTAGL*
Ga0066232_103499Ga0066232_1034992F001758VTGERLGQAGWLNPSKAESKGKVEEAGFTSSSGGVRAPSVTRSVELNGEER*
Ga0066232_103572Ga0066232_1035722F001024MRPTTPLAVENGVGKLAAHLRRLMPARERERGELPPPKFV
Ga0066232_105475Ga0066232_1054751F011719RIHQSLCRRSRAVSRREKGTER*GAMRSRSPTSQVARAGFGPERIAVTQRVSGCYCASARAGGSGGFREEVRQTKDAERRDKLSVRTGKDTRSRQDP*KPSEPSAMLQTIPLTCGPKATRELRGETRGTGPTRGQKPRPTRR*
Ga0066232_105607Ga0066232_1056071F011154VRACLTRMRNLAARSDKKPFRTESSNSSWFRT*VNRSYPEGIRLLLCVSTDGRLWRSPRGGQPNERRRKAGQRERTNREGHAVSAGPVKTFQTAGDVKNGTAGLRTKSNLRVKRRDPWPGANVPSRAEADPELSGQDAEKKSQSCLDLVCEPVAQPPAQAS*KASLEIQTPQGAGRPCYEAADSACRG
Ga0066232_106228Ga0066232_1062281F001346VKTFRNAGDITNDTAGLWTKGNLRVKRRDPWHRANALPEAAADPALSGEDADKKTQTCLGLVRKPVAQPSA*
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