NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300004535

3300004535: Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 56_HOW8 (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300004535 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0114290 | Gp0111190 | Ga0066526
Sample NameFreshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 56_HOW8 (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size32486012
Sequencing Scaffolds2
Novel Protein Genes2
Associated Families2

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Coccolithales → Coccolithaceae → Coccolithus → Coccolithus braarudii2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameFreshwater Sediment Methanotrophic Microbial Communities From Lake Washington Under Simulated Oxygen Tension
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Methanotrophic Microbial Communities From Lake Washington Under Simulated Oxygen Tension

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater lake biome → freshwater lake → lake sediment
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Sediment (non-saline)

Location Information
LocationUSA: Lake Washington, Seattle, Washington
CoordinatesLat. (o)48.3807Long. (o)-122.1599Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006133Metagenome / Metatranscriptome380Y
F037232Metagenome / Metatranscriptome168Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0066526_125156All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Coccolithales → Coccolithaceae → Coccolithus → Coccolithus braarudii595Open in IMG/M
Ga0066526_154141All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Coccolithales → Coccolithaceae → Coccolithus → Coccolithus braarudii516Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0066526_125156Ga0066526_1251561F037232FGIFDSVNTSYGPGYISAIRDDCYVVLLINWALAQGQSPTLYLQKESITAIPGAFPGTTVKTTYGPARISAIRSDGVHIARPINWKLANDTTATLYLQPETVELHQTPGFEEGDEVMTVYGQGFIKNKRSSGDLVVLLRNWALAQGQSPTCFLSPTACVKIPGLKVGAIAKTVWGLVKVLSIRRDGTHVCEAVHWKL
Ga0066526_154141Ga0066526_1541411F006133MKSTLLRMRPVLLVCMIALLVAPLLSAIVQSAGPERRAQDVEDCVACRYIWLQVEMDVGNSQIEENIYDSFTANCIEAQKAPIFYPACQDMFDGIDDMIGDYMDGYTVNQVCENARLCR*
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