Sample 3300004591

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300004591

3300004591: Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 15_LOW5 (Metagenome Metatranscriptome)

Overview

Basic Information
IMG/M Taxon OID	3300004591 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0114290 \| Gp0111163 \| Ga0066499
Sample Name	Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 15_LOW5 (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	60829165
Sequencing Scaffolds	7
Novel Protein Genes	7
Associated Families	5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Enterobacter → Enterobacter cloacae complex → Enterobacter hormaechei	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Freshwater Sediment Methanotrophic Microbial Communities From Lake Washington Under Simulated Oxygen Tension
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Methanotrophic Microbial Communities From Lake Washington Under Simulated Oxygen Tension

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater lake biome → freshwater lake → lake sediment
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Sediment (non-saline)

Location Information
Location	USA: Lake Washington, Seattle, Washington
Coordinates	Lat. (^o)	48.3807	Long. (^o)	-122.1599	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001633	Metagenome / Metatranscriptome	660	Y
F004925	Metagenome / Metatranscriptome	418	Y
F014145	Metagenome / Metatranscriptome	265	Y
F042356	Metagenome / Metatranscriptome	158	Y
F082737	Metagenome / Metatranscriptome	113	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0066499_1000443	Not Available	530	Open in IMG/M
Ga0066499_1009182	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Enterobacter → Enterobacter cloacae complex → Enterobacter hormaechei	510	Open in IMG/M
Ga0066499_1015672	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	639	Open in IMG/M
Ga0066499_1015880	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	639	Open in IMG/M
Ga0066499_1139989	Not Available	524	Open in IMG/M
Ga0066499_1144595	Not Available	758	Open in IMG/M
Ga0066499_1149236	Not Available	710	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0066499_1000443	Ga0066499_10004431	F014145	DFQPGSLPACTASSTANKSAGRFASPLPVGRFLQPPDQCFLARRWPPLARNRSLVTAFRSPATATASRRPPFRGQSSQPATSLPSKFASVPVRPFGSTTASRFAPVAAVSLPLARCTSTTRFSLPRLRSPLPSGTFTSLGIKAFNRVCRLPVHLTNPPDFLSLPAARPDESWGCGS
Ga0066499_1009182	Ga0066499_10091821	F001633	LAFAGGVLPDATLRGMRMFRSHGGTVLTVAGRDLSSEASAPGSVASCRKRHAGRGADTPAIFIVSRRHRYHGDGTSFWLAVGPA*
Ga0066499_1015672	Ga0066499_10156721	F001633	LAFAGGVLPDATLRGMRMFRSHGGTVLTVAGRDLSSEASSPGSDAPCRERRAGRGADTPAIFIVSRRHLYHGDGTSFWPVVGPALRV*
Ga0066499_1015880	Ga0066499_10158802	F001633	LAFAGGVLPDATLRGMRMFRSHGGTVLTVTGRDLLSEASSPGSDAPCRERRAGRGADTPAIFIVSRLHPYHEDGTGFWPAVGPALRV*
Ga0066499_1139989	Ga0066499_11399891	F082737	QLAPQPACQV*ARHIQHAGRCPRLAPRPRSFTRSASLLGDTPASLMVRSQNLEAAFHSPTTTSLLPDLRGGVKVPALPLQLCGTLPVCPVRSDLHPRPVSRTAWDFHDQNPLPSGPAPLLPASLNRCSPSGFFALPDQCTRSNWPTGNLLLDTPDLPSLPTGGRIRYQHQRIIV
Ga0066499_1144595	Ga0066499_11445952	F004925	RSAVIERLLLTGSEIIPGDWGKAVPGWWARLLGNRAERHGGGGRIHQFLWRRSRAVSNAKKELGGEGR*
Ga0066499_1149236	Ga0066499_11492361	F042356	VYQHGAGDSGGFNKPFETAKRKTPKGGQKERTAREGHGDEAGPVKTFQEPAMLKTTPLACERKAT*

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