Sample 3300004621

3300004621: Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA - TNR Reactor, Time D- 0min-Aerobic_ RNA (Metagenome Metatranscriptome)

Overview

Basic Information
IMG/M Taxon OID	3300004621 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0055735 \| Gp0103147 \| Ga0058866
Sample Name	Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA - TNR Reactor, Time D- 0min-Aerobic_ RNA (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Dataset Contents
Total Genome Size	272145878
Sequencing Scaffolds	24
Novel Protein Genes	24
Associated Families	22

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria	2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	11
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia	1
All Organisms → cellular organisms → Eukaryota	1
Not Available	4
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria → unclassified Rotaria → Rotaria sp. Silwood1	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → unclassified Amycolatopsis → Amycolatopsis sp. ATCC 39116	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria → Neisseria mucosa	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Postciliodesmatophora → Heterotrichea → Heterotrichida	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Wastewater Treatment Type I Accumulibacter Community From Ebpr Bioreactor In Madison, Wi, Usa
Type	Engineered
Taxonomy	Engineered → Wastewater → Nutrient Removal → Biological Phosphorus Removal → Bioreactor → Wastewater Treatment → Wastewater Treatment Type I Accumulibacter Community From Ebpr Bioreactor In Madison, Wi, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.076217	Long. (^o)	-89.411742	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000736	Metagenome / Metatranscriptome	914	Y
F001598	Metagenome / Metatranscriptome	665	Y
F002706	Metagenome / Metatranscriptome	535	Y
F008175	Metagenome / Metatranscriptome	337	Y
F008678	Metagenome / Metatranscriptome	329	Y
F010229	Metagenome / Metatranscriptome	306	Y
F011950	Metagenome / Metatranscriptome	285	Y
F017164	Metagenome / Metatranscriptome	242	Y
F020483	Metagenome / Metatranscriptome	223	Y
F023638	Metagenome / Metatranscriptome	209	Y
F029956	Metagenome / Metatranscriptome	186	Y
F032160	Metagenome / Metatranscriptome	180	Y
F033437	Metagenome / Metatranscriptome	177	Y
F039434	Metagenome / Metatranscriptome	163	Y
F045501	Metagenome / Metatranscriptome	152	Y
F054605	Metagenome / Metatranscriptome	139	Y
F065354	Metagenome / Metatranscriptome	127	Y
F069054	Metagenome / Metatranscriptome	124	Y
F083600	Metagenome / Metatranscriptome	112	N
F084936	Metagenome / Metatranscriptome	111	N
F089747	Metagenome / Metatranscriptome	108	Y
F102369	Metagenome / Metatranscriptome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0058866_1000328	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria	557	Open in IMG/M
Ga0058866_1004022	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	720	Open in IMG/M
Ga0058866_1067635	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia	558	Open in IMG/M
Ga0058866_1103892	All Organisms → cellular organisms → Eukaryota	575	Open in IMG/M
Ga0058866_1108844	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	759	Open in IMG/M
Ga0058866_1110609	Not Available	523	Open in IMG/M
Ga0058866_1161953	Not Available	616	Open in IMG/M
Ga0058866_1184549	Not Available	513	Open in IMG/M
Ga0058866_1288333	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria	792	Open in IMG/M
Ga0058866_1290314	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria → unclassified Rotaria → Rotaria sp. Silwood1	981	Open in IMG/M
Ga0058866_1293840	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	509	Open in IMG/M
Ga0058866_1294715	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	786	Open in IMG/M
Ga0058866_1315490	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	887	Open in IMG/M
Ga0058866_1321094	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria → unclassified Rotaria → Rotaria sp. Silwood1	501	Open in IMG/M
Ga0058866_1416863	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	708	Open in IMG/M
Ga0058866_1423168	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	544	Open in IMG/M
Ga0058866_1432078	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → unclassified Amycolatopsis → Amycolatopsis sp. ATCC 39116	1012	Open in IMG/M
Ga0058866_1450657	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	886	Open in IMG/M
Ga0058866_1454421	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	573	Open in IMG/M
Ga0058866_1457405	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	527	Open in IMG/M
Ga0058866_1459333	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	1206	Open in IMG/M
Ga0058866_1459617	Not Available	675	Open in IMG/M
Ga0058866_1469076	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria → Neisseria mucosa	831	Open in IMG/M
Ga0058866_1474108	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Postciliodesmatophora → Heterotrichea → Heterotrichida	766	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0058866_1000328	Ga0058866_10003282	F008175	MVNPLAAALGPVGGLAACACCLLIAAIWGLFATTIALAVYTKDWRDTLRLGSGVDSGAVQMLFSQALLIGILCVYGYMGLRRAIRSAN*
Ga0058866_1004022	Ga0058866_10040221	F069054	NKFRQSFLCNENKTYPMLLSKYSSTRQIYSKLFERAILVRSAHHQTTSDSNQKQYRTPLSLDPDFRAPPDDELPRAKTPEMKGIHFNIRDFYQHYFPNDPVEARLPTPWHMDIYYRKQYYIIGALLGVFFGIYVSYRRILVDRARRRDWEKHHGDPLSYYDVIGPIDPNATRKVWDDNPNLPQPQGWVSKVQTEHQSH*
Ga0058866_1067635	Ga0058866_10676351	F033437	GVGVRHALFPVGTRLDALAFAGGVLPDATLRGMRMYRSHGGTVLTVTGRDLSSEASAPGSDAPCRERLAGRGADTPATCTIRVGTFTTGTAPACDRPLAPRYGSDLLPLRLLFAFAAG*
Ga0058866_1103892	Ga0058866_11038921	F000736	TNRRSNMSEDRAARRNRGGTAAAGDGVVGIPDALLQELIQAFTYIADPSGAGDVTTVKLTEDRLDRLVRSLGIKTSARDMMRDAGGKELDFIGFRDMMIARIKQSDSEENIRNNFQKFENTKGSGKISARELKTALKKMGRVPLRDSEIEEFLRIPGIESDGFIYYEKFMLEFFGEKSKSAD*
Ga0058866_1108844	Ga0058866_11088441	F023638	MICKSLLFLPIFVNLLLVHGKTILNEKCDENTVNLHMLRCYQEHIDSNIDATSAENAYYMEGSLLCQAYNESASYRHCLFSIFDVNDICSFDRYPFSYEYSKIYWKLVMSSCSVDKNENCRPSHLSHQTLSKCHYSFDDKYPTRCKEFLNSVRCMGNHENEIIPRHYGSFCSRNKAYYYYFGDLAARLQLAVNVCEQDSFDN*
Ga0058866_1110609	Ga0058866_11106091	F001598	TGCRDKFLAIKWDPVPDAASYAVFKEVRDIWDMQTVTEACKETLGALRPGNKYLIKILALDASGSRLKTLGTATFVTDGPEDKRQPKIKVEGLEANWEEVLKGYPEPAAKADPYSGATPCPYTWTCTLMNHAGHCQTYGHPRPLVCPNGEGCTLASKEHQAQFSHKA*
Ga0058866_1161953	Ga0058866_11619531	F102369	MKLVHDNFLFLFAFIIIGSQLLSICTANTDATSLDLNKRYRYDKKDISTLSNSMESNDLDTDDGHVLALNKRYRFDKRYRYDKRSNNNGINKRYRFDKRYRFD*
Ga0058866_1184549	Ga0058866_11845491	F089747	KMKVLFLILISIALALSLQVQFPIVLLYNGACDPWARGAACHGTATSEHIATHINANAGAKTSVTNVIGARSRNFGNATYTGSNSYTVYGNVTYGVFDEHAIYFSSLNGFCIPNCTDSHAIFIDTGVINGGLGAYKNATGTYSAIQQPFHGKPGVEFWFNALITLDK*
Ga0058866_1288333	Ga0058866_12883332	F039434	ALEHIEKSKTAFLATLSEAEKGPSSNSMPPKDHFILKFDRNTIKNLKGRVYETMKQYSYEQRGESIPVFVNNREGGDEPTTLNPIKPETPTVGQQYVACIYDDLKIIDALILIEWNQVDELVKTANARRKSVV*
Ga0058866_1290314	Ga0058866_12903142	F032160	MEQTSSNSSNNNLDVVSMIIWLSTGNGKFFELHGSRDIIKQVLPKSSETAFRWGYYNSPADPDRQSYTQVLEDFLKAGFRIEGSSGAGTQGLLRAQYILVKRS*
Ga0058866_1293840	Ga0058866_12938401	F083600	YQEIKRITMSSQRALAAIQTMKIIYGSQGRQNVLPYHYLGQVYRTPWRFWYSNSQVFRWFSRIMLSAFALTLYLPLKGVDLSYTPYTIVHHQLDHKFGDWIEEMRYPVDQKRVEEYKKAHGLK*
Ga0058866_1294715	Ga0058866_12947152	F029956	MLKQLVIILSLIQIISCLSARSNIWWSRRNEKSEINCDVDFQNENPSHEGKICGYCFAKCQQQFAACLLAEINNVIDESIDYCTKLSRTCETHCLSDKRTSRIAERNWSKVVSFLRSFNTLSQNTIEKNEE*
Ga0058866_1315490	Ga0058866_13154901	F054605	KQHYIIFIYFEIIIMMKSIPSFLTILISSQLVIIHISTSTELDRSTINSFRSHWLSDSHGNRNEALKRWLEQKRMGGHSLYSSSSSPFDILHAHKFKGCIDPSEPFQCPQSQQCIALQFICDGHPGDCPGNTDENEETCIAAKRPAKENIEKFLQAEYALHGSKLFAFIFGSKLAKAIEENNAFWFDSLASAFSVSKNLIGFGEKLRLTPDDIAHFRKVIEIVHNGQLEEIPKFAQEAVNQGLASLIEKLYESGFMD*
Ga0058866_1321094	Ga0058866_13210942	F045501	EFPSNSNDLPSSSTTTNTVSQQQQPTTAPPVFKTEMLDWLQSDFDEFDLGPPPTQLASDRVTRSMKKLNVQEKTKQEDDEQDWVHVE*
Ga0058866_1416863	Ga0058866_14168631	F010229	HQVKSVVFLSVKIMLPILRSRVSLTRVITQTLAAQRQRDAFRVPTQNSSAVAPLTDEQRAFNLKIWPGVPETVRPTPIDYCPIDPVEYDKQTNRFSSQVSMWKWLSLLVAIPAVALLTYINLILPQNHTRPEFKDWDHLRPRMKWPIKDGQHSPFHSKWFNAIHFDAKGYETTDAEFEKQFHHGHGSKH*
Ga0058866_1423168	Ga0058866_14231681	F032160	IVLQSKYEKTQLIMAQNTSENNLEVISMVIWLSTGNGKFFELHGSRETIKQILPQSSESAFRWGYYNSPADPDRQSYTQVLEAFLKAGFRIEGSSGAGSQGLLRTQYILVKRNA*
Ga0058866_1432078	Ga0058866_14320781	F011950	FSFSFFLFFVCSIQMGLFGNKREKSEKVDKYEYHASSKGGRPGGYGPPALLGGGYFGGNPSYFDGFSQVAPSSQTGKSSKYANGNKSLYGGVDPMQQAMLLPPSSPAALQAQAAAMFSMQQYMQQQGQGAQFGGILPPIQMPLNVAQQTGILPAQSQPFYGAYPGQQPSTATPFVDPNNVQFGQMVGQPAQQPGAFAPYQQPNFYDPASASAYPAPYGYMPSAF*
Ga0058866_1450657	Ga0058866_14506571	F008678	LIFYILVKKNNVVESFFINRYSTTVSIYFQIYSQTNSIQIIMTALRVFPFIGAAVAIGALVLGIIGVSTTYWFSNAAGHEGLWQKCPLGICVRTDGGRTAAIALAAVIAIGVGALLAVFSGLARQKSDAGNNLARLAGIVSVILLFSSGVLIAAALYTFIGIKNATGYSFTVMGIAQFLSFLAAMLVAHWMGHSFTVIN*
Ga0058866_1454421	Ga0058866_14544211	F020483	MQYQTILAYILVALFGLTFVTAQANKDREQFADLLQKRKHLHGYWVGKRFAAVASDEDFNDSDEDLSAAKRASYLVGKRGTYLVGKRASYLVGRKRRDMMATDNNQQ*
Ga0058866_1457405	Ga0058866_14574051	F020483	MQYHSIIAYLFVMVFAMTIVLTHANKEREQFADLLQKRKHLNGYWVGKRYILTSDEEPSYDSEDDFSAAKRASYLVGKRGTYLVGKRASYLVGRKRRDLMASQ*
Ga0058866_1459333	Ga0058866_14593331	F017164	DFYSLPIFSFFLYLIYVFFVYHLIVYIQSMAANGNVQFNSMPKHMSDSWIVIDDHDESDFVVIENEHAKQLTPVPLIPSPKVSPQTKRPLAQSNNKPTNISQPPTSTSGGKHKKRKWKVLYSLPSTSIKTNVDDSNLDSFVMDQHAQLYDKRDLFSNQQHIVKVK*
Ga0058866_1459617	Ga0058866_14596171	F084936	PHKMLVLLFLVALAIAAPVKPNFSEDFTAEAIYTIRRGRDHPRSFHGQWFHDGTAKRERFDVEADMVGRVDLYKFWNNTKGGLEYEDIKSHQTCHHRPFVQPYHGIFDFVAGSHYAATCDGGKGARWTATIPGAFELDLCASVDGTTPYWVERKHLVEHRLEVTVRFHEFKAGRSVPSPYCEILTYSLF*
Ga0058866_1469076	Ga0058866_14690761	F065354	MSTNKTMTIVALVLATVCLLTVKAEEEKKRTLDSVSGSDFFKRNLDTVSGNDFFKREEEKRTLDSVSGSDFFKKSLDSLNGNDFFKKSLDSLNGNDFFKKSLDSLNGNDFFKKSLDSLNGNDFFKKSLDSLNGNDFFKKSLDSLNGNDFFKKSLDSLNGNDFFKRNDVREQAFRLSHYPNVAREHFHTRLHKQRIGDDNDK*
Ga0058866_1474108	Ga0058866_14741081	F002706	GIIFGVVLGLIITFSFQTENKCHPQCSWKCDDPHCPAICDPVCEPPKCHTSCAEPKNAICDVKCEKPECEIKCPDKGCEMFDCPKCVTVCKQPHCVTHCQAPKPECEAVCEEPRCDWKCHKPACPKPKCELVCENPNCVPKVECCPCAMGAPRVAQPFPFFKEVESNKQCCGCGKLGPTSDIPQVSVANPADFAGLPQSGMADNGSHLLKIDKSADVKLFDKPVVMGTGQYRNEHIPYTSEFNQRDRRELNLNL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300004621: Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA - TNR Reactor, Time D- 0min-Aerobic_ RNA (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences