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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300005058 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0111456 | Gp0113267 | Ga0071082 |
| Sample Name | Co-DHS sludge microbial communities |
| Sequencing Status | Permanent Draft |
| Sequencing Center | University of Illinois, Urbana-Champaign |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 440549816 |
| Sequencing Scaffolds | 7 |
| Novel Protein Genes | 8 |
| Associated Families | 7 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira defluvii | 1 |
| All Organisms → cellular organisms → Bacteria | 5 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Down-Flow Hanging Sponge Reactor Microbial Communities From The University Of Illinois At Urbana-Champaign, Usa |
| Type | Engineered |
| Taxonomy | Engineered → Bioreactor → Unclassified → Unclassified → Unclassified → Down-Flow Hanging Sponge Reactor → Down-Flow Hanging Sponge Reactor Microbial Communities From The University Of Illinois At Urbana-Champaign, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | na → na → na |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Urbana, Illinois, USA | |||||||
| Coordinates | Lat. (o) | 40.114056 | Long. (o) | -88.226756 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F011531 | Metagenome / Metatranscriptome | 290 | N |
| F014031 | Metagenome / Metatranscriptome | 266 | Y |
| F021307 | Metagenome / Metatranscriptome | 219 | Y |
| F038141 | Metagenome / Metatranscriptome | 166 | Y |
| F051238 | Metagenome | 144 | Y |
| F054971 | Metagenome / Metatranscriptome | 139 | Y |
| F065177 | Metagenome | 128 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0071082_100723 | All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira defluvii | 80814 | Open in IMG/M |
| Ga0071082_102713 | All Organisms → cellular organisms → Bacteria | 27333 | Open in IMG/M |
| Ga0071082_103266 | All Organisms → cellular organisms → Bacteria | 22812 | Open in IMG/M |
| Ga0071082_103809 | All Organisms → cellular organisms → Bacteria | 20016 | Open in IMG/M |
| Ga0071082_105836 | All Organisms → cellular organisms → Bacteria | 13386 | Open in IMG/M |
| Ga0071082_128671 | All Organisms → cellular organisms → Bacteria | 2988 | Open in IMG/M |
| Ga0071082_136527 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria | 2394 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0071082_100723 | Ga0071082_10072380 | F065177 | MTMRKIYAWCIRRKHLSLHSIFALLLIGVLPVATSHAAASSTSRTVIIEDWNHSGSGLLPSGWKLEAGKFNDGTGIIRQGDSKFLKMVPDGKVLRVSKSINIDPQNFPILELDLRDKTSEPPALRVILTFDSGVPFFEDTLIYTLGETRPFTFQNKDQWEGYSRNIYNDFFEGFPRKKELPKIIKISLEVEIKSRPNSPLIGEIAFREDEALERINYKGAPLSGIFPPGTIIMKMPNGEVTPLHDLHFHACNHPHDPDGSGNPTKNYKLPIVYSTEIGHAIKALSDLDTS |
| Ga0071082_102713 | Ga0071082_10271326 | F051238 | MITNTLAPGLGSLVALALGGLYHGYRQVRNRKVNEALVQGVETARAILETTPQGQAADAQFVRWLMDHQKEAGIFTVVSELVDQRSDNPAARLTAQEILERIQKAQSPT* |
| Ga0071082_103266 | Ga0071082_1032661 | F051238 | MITNTLAPGLGSLVALALGGLYHGYRQVRNRKVNEALVQGVETARAILETTPQGQQADAQFVKWLMEHQKETGIFTVVSGLVDQHSDNPAARLTAQEIIERIQKAQG* |
| Ga0071082_103809 | Ga0071082_10380916 | F038141 | ILSALFLSSAILSAQGPVTNRMPSTTFRGTIVELICLRQQGAATVSAPEQIACAKKRLAEGGRLGILTEGDGLFQITGSFSNSKYAKLAPLIGQRVDLTGAEVVISNNYDYKSFEAEKVTRVESKK* |
| Ga0071082_105836 | Ga0071082_1058361 | F014031 | MRKQRGRVGLMAAALVGLAVGAAQAQVTTEKSASILVLPKVISDGTRDAVIQITNTSNSMVHAHCFYVNGALTFPDLPPGPLNPPLWTEIDFDIWLTKQQPTHWVVS |
| Ga0071082_128671 | Ga0071082_1286714 | F054971 | IEQGKFPAWVVIIYVVSIVVVAALWLNVAGTLFPSTGGPYAVALTWALCLFGFIFVRTIELFLHRGPHT* |
| Ga0071082_128865 | Ga0071082_1288651 | F011531 | VEPPQPDALEAERFEQEFDQYVESQSVTGLTLAPSSLKAMTPDAVLANLASQVAQARTLRWIASDAMTRNVTDKLQAARTAIARSQVDASGNILGALRTEVAALSGKGFTSEAVALVDANVQYVLRLLAKR* |
| Ga0071082_136527 | Ga0071082_1365275 | F021307 | MNQILYENRCRCNEEFSITKKRKSITRSEGKALQYPTEITSKTFQIKYEKNLSPIAKVILNSFQNKYIYYAIDDILYLLKANTNERDNLLAILYSPILSLQNNFSINFFDI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |