Sample 3300005257

Basic Information
IMG/M Taxon OID	3300005257 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0045212 \| Gp0052315 \| Ga0074076
Sample Name	Hot spring microbial communities from Beowulf Spring, Yellowstone National Park, Wyoming, USA - YNP_Beowulf Spring_D
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300005257 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0045212 | Gp0052315 | Ga0074076

Sample Name

Hot spring microbial communities from Beowulf Spring, Yellowstone National Park, Wyoming, USA - YNP_Beowulf Spring_D

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	20124990
Sequencing Scaffolds	22
Novel Protein Genes	33
Associated Families	17

Dataset Contents

Total Genome Size

20124990

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota	3
All Organisms → cellular organisms → Archaea	1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota → Candidatus Marsarchaeota group 1 → Candidatus Marsarchaeota G1 archaeon BE_D	2
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota → Candidatus Marsarchaeota group 2 → Candidatus Marsarchaeota G2 archaeon BE_D	2
All Organisms → Viruses → Predicted Viral	6
Not Available	8

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota

All Organisms → cellular organisms → Archaea

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota → Candidatus Marsarchaeota group 1 → Candidatus Marsarchaeota G1 archaeon BE_D

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota → Candidatus Marsarchaeota group 2 → Candidatus Marsarchaeota G2 archaeon BE_D

All Organisms → Viruses → Predicted Viral

Not Available

Ecosystem Assignment (GOLD)
Name	Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa
Type	Environmental
Taxonomy	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Ecosystem Assignment (GOLD)

Name

Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Type

Environmental

Taxonomy

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	aquatic biome → hot spring → spring water
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

aquatic biome → hot spring → spring water

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Water (non-saline)

Location Information
Location	USA: Wyoming
Coordinates	Lat. (^o)	44.733	Long. (^o)	-110.709	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

Zoom:	Powered by OpenStreetMap^©

Location Information

Location

USA: Wyoming

Coordinates

Lat. (^o)

44.733

Long. (^o)

-110.709

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F006070	Metagenome / Metatranscriptome	382	N
F011233	Metagenome / Metatranscriptome	293	N
F018963	Metagenome / Metatranscriptome	232	N
F022017	Metagenome / Metatranscriptome	216	N
F026309	Metagenome / Metatranscriptome	198	Y
F026924	Metagenome / Metatranscriptome	196	Y
F027904	Metagenome / Metatranscriptome	193	N
F033507	Metagenome / Metatranscriptome	177	Y
F040183	Metagenome / Metatranscriptome	162	N
F042427	Metagenome / Metatranscriptome	158	Y
F059131	Metagenome	134	N
F067921	Metagenome / Metatranscriptome	125	N
F083455	Metagenome / Metatranscriptome	113	Y
F084460	Metagenome / Metatranscriptome	112	N
F087444	Metagenome / Metatranscriptome	110	Y
F092367	Metagenome / Metatranscriptome	107	Y
F095752	Metagenome / Metatranscriptome	105	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0074076_100071	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota	19513	Open in IMG/M
Ga0074076_100076	All Organisms → cellular organisms → Archaea	18459	Open in IMG/M
Ga0074076_100090	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota → Candidatus Marsarchaeota group 1 → Candidatus Marsarchaeota G1 archaeon BE_D	16709	Open in IMG/M
Ga0074076_100116	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota → Candidatus Marsarchaeota group 2 → Candidatus Marsarchaeota G2 archaeon BE_D	14809	Open in IMG/M
Ga0074076_100385	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota	7222	Open in IMG/M
Ga0074076_100544	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota	5649	Open in IMG/M
Ga0074076_100889	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota → Candidatus Marsarchaeota group 1 → Candidatus Marsarchaeota G1 archaeon BE_D	3996	Open in IMG/M
Ga0074076_100982	All Organisms → Viruses → Predicted Viral	3744	Open in IMG/M
Ga0074076_101060	All Organisms → Viruses → Predicted Viral	3541	Open in IMG/M
Ga0074076_101080	All Organisms → Viruses → Predicted Viral	3484	Open in IMG/M
Ga0074076_101400	All Organisms → Viruses → Predicted Viral	2867	Open in IMG/M
Ga0074076_101446	Not Available	2804	Open in IMG/M
Ga0074076_102421	All Organisms → Viruses → Predicted Viral	1944	Open in IMG/M
Ga0074076_102807	Not Available	1740	Open in IMG/M
Ga0074076_102971	All Organisms → Viruses → Predicted Viral	1672	Open in IMG/M
Ga0074076_103972	Not Available	1337	Open in IMG/M
Ga0074076_104897	Not Available	1116	Open in IMG/M
Ga0074076_106744	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota → Candidatus Marsarchaeota group 2 → Candidatus Marsarchaeota G2 archaeon BE_D	878	Open in IMG/M
Ga0074076_107483	Not Available	822	Open in IMG/M
Ga0074076_107519	Not Available	819	Open in IMG/M
Ga0074076_107640	Not Available	811	Open in IMG/M
Ga0074076_107923	Not Available	783	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0074076_100071	Ga0074076_10007129	F027904	VEHKYEPPDYDLFNLNNGSTTIGTSPVTLLYEGQPNAAVYDPPDLTLRVKQVIIQNTTSSPITVQLLAVAAPNTTLPSPIPKTPPIPVNANSAVTLSEDEWSISIRAGYALAAVSSAASSANVFAKCYFTKGTGSPA*
Ga0074076_100071	Ga0074076_10007133	F006070	MTLYRYLVVDLPIRDTNTHTYRTDPFDPLIPTQPGISLVRLGESVPPVRAFNIYVYNFANAALNVQMIANENAKNYAFGNLLDGLNYFTEESYPDFNVGSAVTVPAGSLSTPSVEAIQSDFYKDAAERYLSVALTYSATPTSGFVRAHIDLFYEGF*
Ga0074076_100071	Ga0074076_1000717	F026924	MSVGKVCWREHYKFEASKIVHLGRHGFHIPVIVYGHDPDPEKAQEDLCINVYGFYEPIGSFRENQLILPPKKGVRVEQEG*
Ga0074076_100076	Ga0074076_10007610	F042427	MNKAIETGKSETGGATDSVPLPLAPRECECPCHVGGESHSCGGMCWHPWLDTDNYTVELASSTNNVDHYVQLYAICSFGKLKFLVFESSNGLLKRFEVN*
Ga0074076_100090	Ga0074076_1000902	F092367	MSENNAINVKRHFEKIDATVAKILRMLNHDLELGLEDDVVVALKLLLYLLHVVEQKAVTKEEKEVVRQVKAQIVEYVMEGE*
Ga0074076_100090	Ga0074076_10009026	F095752	MVSVPTLLEIDPYLRILLETAHQDGWDARPLYEALILDEMDYFTFKKVFLEYLSQEFQEIALSVFNTIERKMIEVSES*
Ga0074076_100090	Ga0074076_1000903	F087444	MSEIKNPKSDSGAGTAKSLSIPQIDPVFSYETEGGNIFVYLVKAGFAVFLFASFDDTHAEYAYAIETLVAKPALVTKPFVNVAKTVWDMLEQAERAFYNPFIQNPFSKLLKEDHEARTKLIVTVQKLLDASGE*
Ga0074076_100116	Ga0074076_10011621	F026309	MSLPAPLSNPNLFIGLVVFIVASILLYLGRIPLSAWTTIVGVLLGYYFGYQHALMEARRRGG*
Ga0074076_100116	Ga0074076_10011629	F067921	VMESFERVDDRLLRNGQYLLVSYSGAKNPAQAMFTGFRVVKHNVTTLYYNFATEVPNFLPMAPYGTSPGPTNSPPYIDNFSFSLQEVKNVTDMFDITKTGDAYQVFYGISPSYLRVMNKVQRQFVSVLEQNIYPSNSFVEMGVDGFQSPLNNPSEKTEFIVFVNLTYNVTLMNTATIPIMPAFNFVVNRMILEPLGQAELKKAILAGFPIRSLGAVDSSIMISPDNYPGLVTLSYREIYGG*
Ga0074076_100116	Ga0074076_10011630	F027904	MEKYEPPEYDLFNLNNGSTAIGTTPAPLLYEGQANAAVIVPPDLTLRVKQVVIQNATTSLITVQLLAVSTVSGAPTPVAKTPPIPVPASSAVTLDEDEWSISVKSGYSLVAVSSAANSANVFVKAYFVKGTGSPI*
Ga0074076_100116	Ga0074076_10011632	F011233	LAIPWFLPFVKGWRYHVPQLQTQLLSGIPVSFTGTYTVLNGEFPGYFVSAAIGTTDPNFITRASADGLTVIEVTVGELRDARVYRNQMGEPNILSYGSYIRGFPLPVYALSLSGDGLPFYQSIKIEVVPRNQPALITGFAANIIEIYDVDLFKESVKEFFESITPSPSTVPTPPGFVAEEVVSAKLPVKVT*
Ga0074076_100116	Ga0074076_10011633	F006070	MTLYPYLVVDLPITDTNTHTYRTDPFNPLTPTQPGISLVRLGESVPPVRAFNIYVYNYANAALSVQVIANENAKNYQYGALLDGLDYQSESGYPDFNVGSPFTVPAGSTSAPSVQAIQSDFYTSAAERYLSVALTYSTPPTSGFVRAHIDLFYGGV*
Ga0074076_100385	Ga0074076_1003854	F033507	MVKSNVLDVDVVQSTTSSGTLTVNLSVTCPSSANGCNVNQVGSTYYLYGVLDGYYYCGLQMGNQSVQYMWTLNISATPVSLASGATVSIEITYFDTLPNKPYYTETWAFTLNSNGQASGEFSACMVPVTIFPESSVGIKVTSVKSASAQPINYTSSSIGIIPE*
Ga0074076_100544	Ga0074076_10054410	F018963	LDSLGDRPVGAKLMFPYVRGEDGSVTDTLIMSFRTGRIVHSKLSVNKYGHGYRAYTLLPANYLMYEAYRTNKGRASIKISVIDVSPNPLSPYRVKDIWVMYEGVSPVTLIEDLPWNIRGIIEGNSGELPLYEYLETEVPR*
Ga0074076_100889	Ga0074076_1008893	F095752	MVSVPALLEIDPYLRILLETAHQDGWDARPLYESLILDEMDYFTFRRVFLEYLSQQFQEIALSVFTKIEEVMLSAGASVPQ*
Ga0074076_100982	Ga0074076_1009824	F040183	MKLKYPFPQRFHYLTVLGKYLTPNTTIVASGANTGPLTANTVCDFVQTPNHKELAVNLTIQAVSGTFATGQGLTAYFDVLDPVEPQNVNVNSSERPPVLELKLNSTAITTAPTTIRLIIANGVATVWINNASTVLGYMNVPYIWQVRFAITGTSPSFSIVGTYEARE*
Ga0074076_101060	Ga0074076_1010604	F006070	MTLYRYLVVDLPIRDTNTHTYRTDPFDPLIPTQPGISLVRLGESVPPVRAFNIYVYNFANAALNVQMIANENAKNYEYGNLLDGLNYFTEESYPDFNIGSAVTVPAGSLSTPSVDAIQSDFYMNAAERYISVALTYSATPTSGFVRAHIDLFYEGF*
Ga0074076_101080	Ga0074076_1010803	F018963	LSRGSVGLDTLGDRPVGTKLMFPYVRGEDGSVTDTLIMSFRTKRVVYSKLSVNKFGHGYRTYVLLPANYVMYEAYRTGRGRASIKISVIDVSPNPLSHFRVKDIWVMYEGVSPVTLVEDLPWNIRGIIEQNSGELPLYEYLETEVPK*
Ga0074076_101080	Ga0074076_1010805	F033507	VVGVATSTTSTEGTLTVSLSVTCPSSATGCNVNQIDGVYYLYGVLDGYYYCGLQMGNQSVQYDWTLNVSATPTSLASGATVFVEVTYFDTLPNKPYYTETYPFTLNSNGQASGEFSVCMVPVTIFPESSVGIKVTSVKLASDQPISYTSSGITIIPED*
Ga0074076_101400	Ga0074076_1014004	F067921	MYFERINDKILRNGQYLLLSYSGAKNPLQAMFTGFRVVKHNVTTLYYNFATQVPNFLPMAPYGTSPGPTNSPYYIDNFSFSLQQVKNVTDMFKITNTGDAYQVFYGISPSYLRVVNKIQQQFVSVLEQNIYPSPSFVEMGIDGFQSPLNNPSEKTEFIVFVNLTYNVTLMNTATIPIMPAFNFVINRMTLEPLDREELKKAILAGFPIRSLGAVDSSIMISPDNYPGLITLSYKEIYGG*
Ga0074076_101446	Ga0074076_1014465	F042427	MSNLETQTSNSGGATNSVPLPLTLPGCECPCHVGGEPILCGAMCWHPQLDADKYVVELTSSTNNVDHYVQLLAVYSGGKLRYLVFDPSNGSARRFEVV*
Ga0074076_102421	Ga0074076_1024211	F067921	MLETFSRIEDRILRNGQYLLVSYSSSQHPDESSYTGFRVTKHNFTTLYYNFATEVSNFLPMAPFGGQASSTTSPPYISNFKFSLQLVQNVTDMFDLSRNYDAYQVFYGIAPSYLRTMLQIQQQFIAVLEQNINPSQSFVEMGIDGFQSPLFAPDPRTEFIVFSNLTYNMTLMNTATIPIMPAFNFVINRMTLEPLSKQEIKKAILAGFPVRTLGAVDSAIPVSRDNYPGLQTVTYKEVYGGGS*
Ga0074076_102421	Ga0074076_1024212	F027904	VQCKYEPPTYDLFNLNNGSTLVGQSPVTLLYEGQPNATVYAPPDLTLRVKQIIIQNATTSPITVQLLAVAAPNTSLPGPIPKTPPIPVNAGSAVTLSEEEWGIAVRSGYGLSAVSSAANSANVFVKCYFTKGTGMPV*
Ga0074076_102807	Ga0074076_1028071	F059131	IEVTVGDLRDARVYRNQMGEPNILSYGAYIRDFPLPVYALSLNGDGLPFYQSIKIEIIPRNQPAFITGFAANIIEIYDVNLFKESVKEFFESITPSTVPPVVPTPPRFVANEVVSTKLPVKVT*
Ga0074076_102971	Ga0074076_1029712	F018963	VQSNVFTVGDKPIGTKLVFPFVRSEDGSIVDTLIMSFRSGRIVRSRLSGNKTRGYRTYLLFPANYVMYEVYRTNRGRASIKVSVIEVPPNPLKHYKVKDVWVMYEGVTPITFLEELPDNIRRIIEHNFEELPLYEYLETEVPK*
Ga0074076_103254	Ga0074076_1032542	F018963	VQSNMFTVGDKPIGTKLVFPFVRSEDGSIVDTLIMSFRSGRIVRSRLSGNKTRGYRTYLLFPANYVMYEVYRTNRGRASIKVSVIEVPPNPLKHYKVKDVWVMYEGVTPITFLEELPDNIRRIIEHNFEELPLYEYLETEVPK*
Ga0074076_103972	Ga0074076_1039721	F083455	MHMDLFSYQLGISSLWAKDFIVALLGTALAVSLTLANKKGESVFIQLAMIMPVAFAIHALPHINYISLNTIFDYGIIAIGISLVLDYITTKAERPDLKYRFINMYILLTLYAIIKYPSDVLVVCVNSVLITIVFALITYIPPVDDIL*
Ga0074076_104897	Ga0074076_1048973	F042427	MSNLENLNLSSNSGGATNSVPLPLTLPACECPCHVGGEPYSCGGMCWHPQLDADEYTFELASSTNNVDHYVQLLAVYSAGRLRYLVFDPSNGSAHRFEVV*
Ga0074076_106744	Ga0074076_1067442	F059131	NILSYGAYIRDFPLPVYALSLNGDGYPLPVDQNRNNTENQPAFITGFAANIIEIYDVNLFKESVKEFFESITPSTVPPVVPTPPRFVANEVVSTRLPVKVT*
Ga0074076_107483	Ga0074076_1074831	F022017	VQVIANENAKNYQYGALLDGLDYQSESSYPDFNVGSPVTVASGSLQPGVQTIQADFYSTSAERYISVALTYSTAPTTGFVRAHIDLFYEGF*
Ga0074076_107519	Ga0074076_1075191	F084460	MNNKNMSQINPDDLLQKIDEIVNKAIAKYLVKQAGPEEINVKFTKNWILVFLPNGYLKISRKFNEGSYKLKILQYKEKK*
Ga0074076_107640	Ga0074076_1076402	F026924	LSVSKVCWRQHYKFEASKIVHLGRHGFHIPVIVYGHDPDPEKAQEDLCINVVGFYEPIGSFRENQLILPPKKGERV*
Ga0074076_107923	Ga0074076_1079232	F026924	MSVSKVCWRQHYKFEASKIVHLGRHGFHIPVTVYGHDPDPEKAQEDLCINVVGFYEPIGSFRENQLILPPKKGERV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300005257: Hot spring microbial communities from Beowulf Spring, Yellowstone National Park, Wyoming, USA - YNP_Beowulf Spring_D

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences