NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300005278

3300005278: Hot spring sediment microbial communities from Great Boiling Spring, Nevada - cellulolytic enrichment CS 77C



Overview

Basic Information
IMG/M Taxon OID3300005278 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0060837 | Gp0052039 | Ga0065718
Sample NameHot spring sediment microbial communities from Great Boiling Spring, Nevada - cellulolytic enrichment CS 77C
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size138921631
Sequencing Scaffolds12
Novel Protein Genes13
Associated Families5

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → environmental samples → uncultured archaeal virus1
Not Available6
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon3
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Desulfurococcales → Desulfurococcaceae → unclassified Desulfurococcaceae → Desulfurococcaceae archaeon1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales → Halobacteriaceae → Halalkalicoccus → Halalkalicoccus jeotgali1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHot Spring Microbial Communities From Great Boiling Spring, Nevada
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Spring → Hot Spring Microbial Communities From Great Boiling Spring, Nevada

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biome → hot spring → sediment
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationGreat Boiling Spring, Nevada
CoordinatesLat. (o)40.71458Long. (o)-119.369659Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006925Metagenome362Y
F027047Metagenome196Y
F038537Metagenome165Y
F064214Metagenome129Y
F079345Metagenome / Metatranscriptome116Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0065718_1005611All Organisms → Viruses → environmental samples → uncultured archaeal virus6525Open in IMG/M
Ga0065718_1013638Not Available743Open in IMG/M
Ga0065718_1025304All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon7799Open in IMG/M
Ga0065718_1029162All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Desulfurococcales → Desulfurococcaceae → unclassified Desulfurococcaceae → Desulfurococcaceae archaeon2168Open in IMG/M
Ga0065718_1035292Not Available1275Open in IMG/M
Ga0065718_1036126All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon1215Open in IMG/M
Ga0065718_1036402Not Available1196Open in IMG/M
Ga0065718_1056678Not Available642Open in IMG/M
Ga0065718_1057021All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon638Open in IMG/M
Ga0065718_1057112Not Available608Open in IMG/M
Ga0065718_1058649Not Available619Open in IMG/M
Ga0065718_1064314All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales → Halobacteriaceae → Halalkalicoccus → Halalkalicoccus jeotgali552Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0065718_1005611Ga0065718_10056117F027047MELGSLGIAVLSAVVYSLSMYVKKHLNTDNPQSFDVAKFITTLIWGVIIGILLQAFGAPVTEQAVEEQFVAYAGIIAITENIAKTIIRAIRR*
Ga0065718_1013638Ga0065718_10136382F027047MDLSSLGIAVLSAVVYSLSMYVKKHLNSDNPQSFDTTKFLTTLIWGIIVGAILQFSGVPITEQSVEEQFIAYAGLIAITENIIKAIIRAVDR*
Ga0065718_1025304Ga0065718_102530413F079345MLPVALGLELDGLSVLQRKLLLEVLHRYPQYWSRFISPRHGWLSQKETLEEFLQNHQTELVKEFAKAGLHGNGWKTSRRSEMHVQG*
Ga0065718_1029162Ga0065718_10291624F027047MDLSSLGIAVLSAVVYSLSMYVKKHLNPDNPQSFDVAKFITTLIWGIIVGAILQFSGVPITEQSVEEQFIAYAGLIAITENIIKAIIRAVKI*
Ga0065718_1035292Ga0065718_10352923F027047MDTSSLIIAIISAVVYSLSMYVKKHLNPNNPQNFDTVKFITTVIWGVLIGGFLAISGLPVTEMSVEEQFLAYAGLIAITENIVKSILRALTRNQSEDSDTTNQ*
Ga0065718_1036126Ga0065718_10361261F064214MSGKGDLKVLVKSAEDLAYALRDTLDVIADHERRIKRLEEKLGFLADVESRVVEKAVAGGHSE*
Ga0065718_1036402Ga0065718_10364021F027047MDWSSLGIAVLSAVIYSLSMYVKKHLNPDNPQAFDKVKFITTLIWGIIIGVVLQLSGVEITERTVEEQFVAYAGLIAITENIIKAVIRAVKR*
Ga0065718_1049678Ga0065718_10496781F027047LSSLGIAVLSAVVYSLSMYVKKHLNPDNPQSFDAAKFLTTLIWGIIVGAILQFSGIPITEQS
Ga0065718_1056678Ga0065718_10566782F027047MDLSSLGIAVLSAVVYSLSMYVKKHLNTDNPQSFDTTKFLTTLIWGIIVGAILQFSGVPITEQSVEEQFIAYAGLIAITENIIKAIIRAVDR*
Ga0065718_1057021Ga0065718_10570211F038537MIVRVYFWKDLAPLLKRFCREHNIALNRVINLAVQSFIGTSNVEELKLCAKLNQLLREEAELRRVCNAMLRSGSYLPGYVQRVLREPGRSLTHLLDPQRPLKALNPREERVFRKIAARRERIAREIAEIQEQLLRDVKPFRLKPDLRLSRSRARGKNKLKGGEKPNG
Ga0065718_1057112Ga0065718_10571122F027047MDLSSLGIAVLSAVVYSLSMYVKKHLNPNSPQSFDAAKFITTLIWGVIIGILLQAFGVPVTEQAVEEQFVAYAGIIAITENIVKTIIRVIRR*
Ga0065718_1058649Ga0065718_10586492F006925VEVSVLENFGREAELRKKWMRMWERLGVRILKMPKWMQEIVLEDINTAIRNRIAIMEMIQNAKRNR*
Ga0065718_1064314Ga0065718_10643141F027047MDLSSLGIAVLSAVVYSLSMYVKKHLNTDNPQSFDATKFLTTLIWGIIVGAILQFSGVPITEQSVEEQFIAYAGLIAITENIIKAIIRAVDR*
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