NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300005281

3300005281: Thermophilic microbial communities from the Joint Bioenergy Institute, California, USA of rice/straw/compost enrichment - eDNA_2



Overview

Basic Information
IMG/M Taxon OID3300005281 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063773 | Gp0052187 | Ga0065720
Sample NameThermophilic microbial communities from the Joint Bioenergy Institute, California, USA of rice/straw/compost enrichment - eDNA_2
Sequencing StatusDraft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size417494827
Sequencing Scaffolds14
Novel Protein Genes16
Associated Families9

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria9
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia1
Not Available2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Scuticociliatia → Philasterida → Pseudocohnilembidae → Pseudocohnilembus → Pseudocohnilembus persalinus1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameRice-Straw Enriched Compost Microbial Community From Berkeley
TypeEngineered
TaxonomyEngineered → Solid Waste → Grass → Composting → Bioreactor → Rice-Straw Enriched Compost → Rice-Straw Enriched Compost Microbial Community From Berkeley

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationDavis, California, USA
CoordinatesLat. (o)38.5402727Long. (o)-121.7500776Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001564Metagenome / Metatranscriptome670Y
F003125Metagenome / Metatranscriptome506Y
F011110Metagenome / Metatranscriptome295Y
F021039Metagenome / Metatranscriptome220Y
F034478Metagenome / Metatranscriptome174Y
F035426Metagenome / Metatranscriptome172N
F046219Metagenome151Y
F064527Metagenome / Metatranscriptome128Y
F076964Metagenome117Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0065720_1003910All Organisms → cellular organisms → Bacteria16253Open in IMG/M
Ga0065720_1007415All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia3726Open in IMG/M
Ga0065720_1007992All Organisms → cellular organisms → Bacteria2764Open in IMG/M
Ga0065720_1029712All Organisms → cellular organisms → Bacteria3570Open in IMG/M
Ga0065720_1030944All Organisms → cellular organisms → Bacteria3281Open in IMG/M
Ga0065720_1031435Not Available3179Open in IMG/M
Ga0065720_1033693All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Scuticociliatia → Philasterida → Pseudocohnilembidae → Pseudocohnilembus → Pseudocohnilembus persalinus2743Open in IMG/M
Ga0065720_1037050All Organisms → cellular organisms → Bacteria2402Open in IMG/M
Ga0065720_1045441All Organisms → cellular organisms → Bacteria1807Open in IMG/M
Ga0065720_1051708Not Available1533Open in IMG/M
Ga0065720_1052492All Organisms → cellular organisms → Bacteria1494Open in IMG/M
Ga0065720_1057010All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales1368Open in IMG/M
Ga0065720_1059015All Organisms → cellular organisms → Bacteria1304Open in IMG/M
Ga0065720_1084487All Organisms → cellular organisms → Bacteria884Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0065720_1003910Ga0065720_10039102F001564LCDPRLCPEAPDGGGRCDHCPLDRLDAAQSSETGLLIRRALDLRAALKLGVRVSLDEIRADEFYAMXIXEEERERLDQERINSHGR*
Ga0065720_1003910Ga0065720_10039105F011110MNEFIWMSPPFGQGEPVQVEAKPEVLIPLMVAGYSQCEPPASREEVKEDVHG*
Ga0065720_1007415Ga0065720_10074153F003125MDPFRILKQTWSVGDTIEVEAYRVERQVGLEYDSYRCVYLAHGHEWQIAGQIAKDDGKKYYLLECVA*
Ga0065720_1007992Ga0065720_10079923F001564GGPRPKLLNGEWPERPSVRFLIHWALRREELCDPRLCPDAPEDGGRCDHCPLDKLDAAQSSETGLLIRRALDLRAALKLGVRVSLDEIRADEFYAMLILEEEKEQLDRERVNGDRR*
Ga0065720_1029712Ga0065720_10297124F001564LCDPALCPDAPEGGRCDHCPLDRLDAAQSSEPGQLLRRALDLRAAFKLGVKLSLDEIAADEFQAMLIVEEEQARFDEERLNRHG*
Ga0065720_1030944Ga0065720_10309444F001564VHWALRREELCDPRLCPDAPEDGGRCDHCPLDKLDAAQSSETGLLIRRALDLRAALKLGIRVSLDEIRADEFYTMLILEEERERLDQERINSHGR*
Ga0065720_1031435Ga0065720_10314351F034478YGTYQEGKISFDHREEAEPVGNFLAGMRIDSISLWFLRTDNQNVALQGICTSYKKLNEDNFFESFESVDDKIKNSDRDYDIVHFDDGEYIREINVTVASANNKIGAIEFVTTNKGRKVLAYGSTNANAEDGKQSEPLPPGETKKFDFLKADGDNFPGYVVGFYGQHDENHITYLGVYVAPLTEINYYARRPYILTFKKMQQDKNLINQVAANLKVEREGERFKDANLEDTDGNSSKILLYFLDASLNHPELFKAVLEYL*
Ga0065720_1033693Ga0065720_10336933F034478MDVEHGNLIQQDRPTIVRKVDLYGSPQEGKISFDHREEAEPVGNFLAGMRIDSISLWFLRTDNQNVALQGICTSYKKLNEDNFFESFESVDDKIKNSDRDYDIVHFDDGEYIREINVTVASANNKIGAIEFVTTNKGRKVLAYGSTNANAEDGKQSEPLPPGETKKFDFLKADGDNFPGYVVGFYGQHDENHITYLGVYVAPLTEINYYARRPYILTFKKMQQDKNLINQVAANLKVEREGERFKDANLEDTDGNSSKILLYFLDASLNHPELFKAVLEYL*
Ga0065720_1037050Ga0065720_10370502F046219LLRRALDLRAALKLGVRIELDEIRADEFRALVVLEEERDSLDREQMNSHGR*
Ga0065720_1045441Ga0065720_10454413F076964MSDSKVWLRPPWGEGEPKEVEATPAVLVPLLVAGWSQCAPPEPEVKEDVHD*
Ga0065720_1051708Ga0065720_10517083F021039GETKKFDFLKADGDNFPGYVVGFYGQYDENHITYLGVYVAPLTEINYYARRPYILTFKKMQQDKNLINQVAKHLNVEREGERFKDANLEDTDGNSSKILLYFLDASLNHPELFKAVLEYL
Ga0065720_1052492Ga0065720_10524922F001564LIHWALRRDELCDPGLCPDAPDDGGRCGHCPLDRLDAAQSSEVGILLRRALDLRAALKLGIRVGLDEIRADEFRALVVLEEERDALDHEQLGPKPKAAFQ*
Ga0065720_1057010Ga0065720_10570102F064527MSTPRDPADRVRTLLLRADNVLKNEGDPADRARRAREALEEARAVAAGGGVDPRVAELIERRLAALEAGGPG*
Ga0065720_1059015Ga0065720_10590152F011110MNEFVWMSPPFGQGEAVQVEAKPEVLVPLMVAGYSQCEPPASREEVKEDVHG*
Ga0065720_1084487Ga0065720_10844871F001564LIHWAFRREELCDPGLCPDAPDDGGRCDHCPLDKLDAAQSSEAGLLLRRALDLRAALKMGVRIGLDEIRADEFQSLVVLEEERERLEQMRLADR*
Ga0065720_1139537Ga0065720_11395371F035426MPLGRRWQQIDVNCFWVLEQDRESYNREVYLPDAYIEAIINVGAPLMLESGYGMLELPRAFVNPLQNKPLRIRAAGFCQMISMQLYPWVVKPILNIDPDPSTARVIALDADWQRFAEYLAQIVAHRGYGEAIACLQEYVCKTAYRHKHDLTF
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