NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300005300

3300005300: Hot spring microbial communities from Great Boiling Spring, Nevada - cellulolytic enrichment S 77C



Overview

Basic Information
IMG/M Taxon OID3300005300 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0060837 | Gp0052399 | Ga0072500
Sample NameHot spring microbial communities from Great Boiling Spring, Nevada - cellulolytic enrichment S 77C
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size125361107
Sequencing Scaffolds10
Novel Protein Genes10
Associated Families9

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria6
Not Available2
All Organisms → cellular organisms → Archaea1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Wolframiiraptoraceae → Candidatus Terraquivivens → Candidatus Terraquivivens tikiterensis1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHot Spring Microbial Communities From Great Boiling Spring, Nevada
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Great Boiling Spring, Nevada

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biome → hot spring → spring water
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationGreat Boiling Spring, Nevada
CoordinatesLat. (o)40.71458Long. (o)-119.369659Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014385Metagenome / Metatranscriptome263Y
F019254Metagenome231Y
F027047Metagenome196Y
F028182Metagenome / Metatranscriptome192N
F056638Metagenome / Metatranscriptome137N
F063403Metagenome / Metatranscriptome129N
F080678Metagenome115N
F083525Metagenome / Metatranscriptome112N
F084856Metagenome / Metatranscriptome112N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0072500_126005All Organisms → cellular organisms → Bacteria4644Open in IMG/M
Ga0072500_140253Not Available14747Open in IMG/M
Ga0072500_142303All Organisms → cellular organisms → Bacteria20377Open in IMG/M
Ga0072500_143923All Organisms → cellular organisms → Bacteria699Open in IMG/M
Ga0072500_144104All Organisms → cellular organisms → Bacteria649Open in IMG/M
Ga0072500_147505All Organisms → cellular organisms → Bacteria1645Open in IMG/M
Ga0072500_150339Not Available24117Open in IMG/M
Ga0072500_172484All Organisms → cellular organisms → Archaea11246Open in IMG/M
Ga0072500_173685All Organisms → cellular organisms → Bacteria899Open in IMG/M
Ga0072500_179894All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Wolframiiraptoraceae → Candidatus Terraquivivens → Candidatus Terraquivivens tikiterensis5542Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0072500_126005Ga0072500_1260052F019254MPNERIHEALSHLRDEWPLRVLLSALAERVAELAALLGRAEAQNLPPEFLTRIRAIEEEMRELSLLCQRPPAPEGRRKKKKVEDLPLF*
Ga0072500_140253Ga0072500_1402533F084856MSGTFNLTIVTHIYTSQHAEALKETLPEWVRLSPSQILVGYYQKKLQPSDFQCLETYDGVELVPIDSSSYGAAYDVLLERVVGKPILILAPYVIPKDWFVGSVSKWFESYAIIGHYKQPRILVADAILMPLIAPVVVELGRLQMDCIAVREDVPRSVGYHEWWFGSILVRARPGAFLLYNALAAGYPVLTLPYNCKPVRYVRNPERQSSKAHKK*
Ga0072500_142303Ga0072500_14230330F080678MFVKKVDVRTVPITQAYENWECIWLGEREIRRFLAYTGLTAPPYNLRVENFLKFPYLRGMTARRFVQKLRRLGVTWSWNNDAMRRSILLAIGYRLLEIEEFEHYRIFGRKEVSVNV*
Ga0072500_143923Ga0072500_1439232F014385REVGDWWDLVQLALVRSALEQLSPEEEQALWLYAEGARLTKQQHALAEATLAKVRRMLNLE*
Ga0072500_144104Ga0072500_1441041F083525LATLPVREGAAAALQPYYHPYFVAVLWEGRTRCDSLWRSLKGDVGAILPTVQGTTPYARLYWTGYALGSAPVNVNMRVLARAVDHNGVPLGSGWRPIGQATIQTPPLRWFRVEIPEGHWDEYRIEVRSATPRLVYSRVIASQGYWKE*
Ga0072500_147505Ga0072500_1475053F028182MPKVSISEAARRLDTTEEVIREWIRLGLLDVEPPPAKPRRTRELNLAFQPTSATPEPKVDLEQLYEVAEREGWLLLSLEAWDAADSEP*
Ga0072500_150339Ga0072500_1503396F063403MEGNINRTEALRELRAAIRSVRRTPIKIPFGNSDKFFIEIRIPKFSERLDIQMAAELFLGGFDSSERLVKSLPPLITSFRLPAEDEEGNLMQAVYNAEPLPDLPVLQLEPSDLFSDESAFNATPVLMTLIITTLLTLSGRTQNVAAGMNELLELFPGTNQNATDLLDKGSSRVSGSE*
Ga0072500_172484Ga0072500_1724845F027047LSSLGIAVLSAVAYSLSMYVKKHLNTDNPQSFDATKFLTTLIWGIIVGAILQFSGVPITEQSVEEQFIAYAGLIAITENIIKAIIRAVDR*
Ga0072500_173685Ga0072500_1736851F056638MPSSWLQRCRDEYYTENPVVWLLAKTESELCLRQISAPEPAEAGSAPSRLQLLKSDPVYSTRYFLWTDEKEFERTLLVPWHLPSNRWMPVSDQIYLAVASLITMTALVIHYALAKSPVWVGAVGVGVVVLAFFLPMARPMLALHSLAQTLTTETPLHIGVSRLTPAHLVYGALLYGVGRAARASAVYGILPALLVATIAQGTVFRGLPTAILLWGYSVCVGALWILCTLAIVYGQATRLYGASRDGGGWPGDPR
Ga0072500_179894Ga0072500_1798947F027047MDTSSLIIAIISAVVYSLSMYVKKHLNPDNPQNFDTVKFITTVIWGVLIGGFLAISGLPVTEMSVEEQFLAYAGLIAITENIIKSILRALTRNQSEDSDTTNQ*
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