NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300005342

3300005342: Hot spring viral communities from Yellowstone National Park, Wyoming, USA - Nymph Lake



Overview

Basic Information
IMG/M Taxon OID3300005342 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0045297 | Gp0051221 | Ga0074234
Sample NameHot spring viral communities from Yellowstone National Park, Wyoming, USA - Nymph Lake
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size878426
Sequencing Scaffolds5
Novel Protein Genes7
Associated Families7

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Predicted Viral2
Not Available3

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHot Spring Viral Communities From Yellowstone National Park, Wyoming, Usa
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Hot Spring → Hot Spring Viral Communities From Yellowstone National Park, Wyoming, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biome → hot spring → spring water
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationNymph Lake, Yellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.7523206Long. (o)-110.7253926Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F063846Metagenome129N
F063848Metagenome / Metatranscriptome129N
F075084Metagenome / Metatranscriptome119N
F076264Metagenome / Metatranscriptome118Y
F080245Metagenome115N
F087442Metagenome / Metatranscriptome110N
F087445Metagenome / Metatranscriptome110Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0074234_1109All Organisms → Viruses → Predicted Viral3648Open in IMG/M
Ga0074234_1221Not Available1369Open in IMG/M
Ga0074234_1303Not Available665Open in IMG/M
Ga0074234_1315Not Available973Open in IMG/M
Ga0074234_1791All Organisms → Viruses → Predicted Viral4626Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0074234_1109Ga0074234_11091F075084MRPCHKDLCLMYSLGVDYARLLDFTEQNPTGKLFRRAERAMIYARRLLASWYGYDTRMLMETALRRILKKSIIYCNLVKRLGLESQYCKRYTYYDEVPCELVTEYDVEVAYADIMHMITNYNNETTSEILTNMTKECSTYEVR*
Ga0074234_1221Ga0074234_12211F087445MSSSSVKPGDDIINRLMNMSDYELKRVFKTIPIDKRLALALDAIQEYQSIQSKFNNLLNGLAMNAPKVKEVMDTARKNRKPMDRLADMFMDMMETMLKSKAMSLTDEDKAKFREKLKEVMQDEE*
Ga0074234_1221Ga0074234_12213F076264MSAISSGIQSLVNGLQNLFVALVDVFGNAINAIGNTLSSLAQPIGYLVGVLAVFGSLVGIILYVFRGRGGIGGLVGSIKNFFTGFI*
Ga0074234_1303Ga0074234_13032F087442MMREGLVKAGNLIVDCKPCYIAGTGFTKDDMYVVSEGNVVFKWYDKIALITVSQEGVKITLVDVIDVRFLVERNENCMVTKL*
Ga0074234_1303Ga0074234_13033F080245VIFVWTAKVVMPGFREEIFVSPALINSLGELTEDVYEVGMFAVPHAGHALLFLPTMVINLNDNLMKQLEDT
Ga0074234_1315Ga0074234_13152F063848KMAKAYDQSATRRNQRAVNGFAILKQVQQTVRDYLNEASEAMKKPIIAQLGVEFLGIAMAYLRASNEGFSSYALTGRVAQIATLKATGIISSTELTCAQAGEIINGMLKKVSGMSADPLTFTENDGICEATPANPMPKLSIASPSTGYTVSLNDVLKAKTPEEVLMGK*
Ga0074234_1791Ga0074234_17915F063846MRINTDALLGLGAVAVLTAILLFIAWYHTYPQLTCAYVTTHYANHVLTVLVNFTCNGNLYAVWDVNAGNCIYNYNASQQLPTVTNSLISWSNYVAWNFTFTCTKPPGNVTVDLTTPAGAGYAQCHYLLTIPTNTTAAVKC*
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