NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300005386

3300005386: Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1700_B MetaT (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300005386 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0046783 | Gp0111615 | Ga0068653
Sample NameAnoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1700_B MetaT (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size9940483
Sequencing Scaffolds4
Novel Protein Genes6
Associated Families4

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available3
All Organisms → cellular organisms → Bacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameAnoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biome → hot spring → microbial mat material
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationUSA: Wyoming: Yellowstone National Park
CoordinatesLat. (o)44.539Long. (o)-110.798Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006938Metatranscriptome361N
F010840Metagenome / Metatranscriptome298Y
F039156Metatranscriptome164N
F077351Metatranscriptome117N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0068653_100087Not Available511Open in IMG/M
Ga0068653_100284Not Available607Open in IMG/M
Ga0068653_102365Not Available554Open in IMG/M
Ga0068653_127058All Organisms → cellular organisms → Bacteria535Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0068653_100087Ga0068653_1000871F077351MSNLRPQYGKPVGRIIRGRVKVTIKAERLEGFWREVTRQWNRQVLNKVPGAQDLLLSEREWLVLWRGVLATRCLFVDPQGEYPRYRAIIPKRCEIPPLFWECLWNFGVYRTKWGADYLIVAEAEWPSQEEFSAVYAKWLNALSAYLAIMEMSRSLPSDVDA
Ga0068653_100284Ga0068653_1002841F077351MSNDRPQYGKPVGRTIRGRVKVTVKAERLEGFWRDVTRQWNRQVLNKVPGSQDLLLTEEEWLTLWRGILATRCHYIDPEREYPRYRVIVPKRCEVPLLMWEALWNFGIYRSKWGADYVITAEAEWPSQEEMSRVYAKWLNALSVYLAVLEMSRSLPSDVDAAPSFVVNVIERGGGVTVQSSYPMEDVTPRH
Ga0068653_100310Ga0068653_1003101F006938GRQNGLSEAEIVSDEPLSPMLGTVKTGHVVDRRAAELVEALFGKEVRDRARNYTRSGATLELLYESLGKYDHGDIAWSALNEDVRSRLADAMNEAYKVFGVKGLTPKPLNEVRVEPSSPGASWRLYGRTGKRTDLSVYAEGLARAQNIMEKAMRRKQPYCELAPCLAYLR
Ga0068653_102365Ga0068653_1023651F039156GAVITIGLVAVALTRLWVKQISLRLDESLEFDQKLVPLRNALTALRDATAQAHSIARELQTLQQLREEASTVITELRGLREDFAQTYNNMLDDLTTHGETLVEMSCQLKEAHDKLDEAFLKNLIVRVVFNTEQGRSGEGLIAFLEANGYRINARLRALIVEFYNRDPGSSVRETTRLREEPVNE
Ga0068653_127058Ga0068653_1270581F010840VNLPFSQPLDKITYGALAAATVVILAWALREFAGIDLPAEVQSALALLVGFGISYYVPLSEVE
Ga0068653_128419Ga0068653_1284191F006938MLRIRVTIGRQNGLSEAELVSDEPLAPMLGTVKTGHVVDRRAAELVEELFGKEVRDRARNYTRSGATLELLYASLGKYDHGDVAWSALSDDIRARLRDAMNEAYKVFGAKGLTPKPLNEVKIEPSSPGASWRLYGRTGKRTDLDVYVEGLARAQTIMDKAKRRKQPFCELPPCLAYLRTQLAPRNSPKVRLVWGFPFEINLIEGAFADAYQEALLC
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