NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300005387

3300005387: Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1900_B MetaT (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300005387 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0046783 | Gp0111617 | Ga0068655
Sample NameAnoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1900_B MetaT (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size10897164
Sequencing Scaffolds5
Novel Protein Genes7
Associated Families6

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Candidatus Thermofonsia → Candidatus Thermofonsia Clade 3 → Candidatus Roseilinea → unclassified Candidatus Roseilinea → Candidatus Roseilinea sp. NK_OTU-0061

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameAnoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biome → hot spring → microbial mat material
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationUSA: Wyoming: Yellowstone National Park
CoordinatesLat. (o)44.539Long. (o)-110.798Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006938Metatranscriptome361N
F007225Metagenome / Metatranscriptome355Y
F015874Metatranscriptome251N
F021779Metagenome / Metatranscriptome217N
F039156Metatranscriptome164N
F077351Metatranscriptome117N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0068655_100823Not Available666Open in IMG/M
Ga0068655_104090Not Available662Open in IMG/M
Ga0068655_104151Not Available503Open in IMG/M
Ga0068655_104181Not Available966Open in IMG/M
Ga0068655_132164All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Candidatus Thermofonsia → Candidatus Thermofonsia Clade 3 → Candidatus Roseilinea → unclassified Candidatus Roseilinea → Candidatus Roseilinea sp. NK_OTU-006657Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0068655_100215Ga0068655_1002151F006938MLRIRVTIGRQNGLSEAEIVSDEPLSPMLGTVKTGHVVDRRAAELVETLFGKEVRDRARNYTRSGATLELLYESLGKYDHGDIAWSALNEDVRSRLADAMNEAYKVFGVKGLTPKPLNEVRVEPSSPGASWRLYGRTGKRTDLSVYTEGLVRAQDMMEKAKRRKQPYCELAPCLAYLRTQLAPRNSPKVRLVWGYP
Ga0068655_100823Ga0068655_1008231F039156VLNPFSNTSTLIVVGAVITIGLVAVVLTRLWVKQISLRLDESLEFDQKLVPLRSALTALRDATAQAHSIARELQTLQQLREEASTVITELRGLREDFAQTYNNMLDDLTTHGETLVEMSCQLKEAHDKLDEAFLKNLIVRVVFNTEQGRSGEGLIAFLEANGYRINARLRALIVEFYNRDPGSSVRET
Ga0068655_103462Ga0068655_1034621F007225MRKFAAITALLAVATTASFAQFGIYGATALGESTGLGGGFQGGFVNGQEFDLLIRMDVPPGVPRFPRNGGGSLAFNFNPRYIDIKVFDGETGDPITIAQAVADARVGEIVNLGRYAFPGTTIRGVTLVGAAAFGARKNADGTIGVRIAFLSTNVLVSNATHAEPFMRTGPEDDDGNRRLP
Ga0068655_104090Ga0068655_1040901F015874MTEELGHRLKEEPVGTTIRGRIKVTIQSEKIEAFWKAVTRQWNRLAAAKSPGCEDLLLTEREWLVLWRGLLAARCNYIDPEASYPVYRSLRPRRAEIPSLMWEALYCYGHVATEFGADYIVCATADWPSAEEFSQAYGKWLNALPIYLLVMECARSLPESERACPAFVLNVTERNGSLVVQSNYPLRDVRPRDTLWSVIALPPTPDLA
Ga0068655_104151Ga0068655_1041511F077351MSNLRPQYGKPVGRIIRGRVKVTIKAERLEGFWREVTRQWNRQVLNKVPGAQDLLLSEREWLVLWRGVLATRCLFVDPQGEYPRYRAIIPKRCEIPPLFWECLWNFGVYRTKWGADYLIVAEAEWPSQEEFSAVYAKWLNALSAYLAIMEMSRSLP
Ga0068655_104181Ga0068655_1041811F015874MTEELGHRLKEEPVGTTIRGRIKVTIQSEKIEAFWKAVTRQWNRLAAAKSPGCEDLLLTEREWLVLWRGLLATRCNYIDPETSYPVYRSLRPRRAEIPSLMWEALYCYGHVATEFGADYIVCATADWPSAEEFSQAYGKWLNALPIYLLVMECARSLPESERACPAFVLNVTERNGSLVVQSNYPLRDVRPRDTLWSVIALPPTPDLAVPKTVYLEWDPNSIIGEILSSMIKREG*
Ga0068655_132164Ga0068655_1321641F021779FTNRAGTVESTYSDTIAPLSSKGYNTRFGGALSIAARDNIRGLDLGGTSSTPAFVGSAQVTSSQPLICIAKQIYDKDSTAIPTGSPPSEDPKTRQSLGYNGINLSDAKTEIFLPIAWRINNQPTCNFWRYTGLIVQNAGTSNATVTVTAYTTAGAIVNTYNDPTPLTPLTPRGYNTRFGAYSTAVGSALGPNFDGVLRLTSTQPLVAVAESWQNCDSG
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