NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300005388

3300005388: Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1500_B MetaT (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300005388 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0046783 | Gp0111614 | Ga0068652
Sample NameAnoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1500_B MetaT (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size20627094
Sequencing Scaffolds5
Novel Protein Genes7
Associated Families6

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Roseiflexus → unclassified Roseiflexus → Roseiflexus sp. RS-11

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameAnoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biome → hot spring → microbial mat material
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationUSA: Wyoming: Yellowstone National Park
CoordinatesLat. (o)44.539Long. (o)-110.798Alt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006938Metatranscriptome361N
F014979Metatranscriptome258N
F015874Metatranscriptome251N
F066811Metagenome / Metatranscriptome126N
F077351Metatranscriptome117N
F088951Metagenome / Metatranscriptome109N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0068652_102860Not Available937Open in IMG/M
Ga0068652_103110Not Available773Open in IMG/M
Ga0068652_103754All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Roseiflexus → unclassified Roseiflexus → Roseiflexus sp. RS-1643Open in IMG/M
Ga0068652_149982Not Available605Open in IMG/M
Ga0068652_151753Not Available545Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0068652_100326Ga0068652_1003261F006938MLRIRVTIGRQNGLSEAELVSDEPLAPMLGTVKTGHVVDRRAAELVEELFGKEVRDRARNYTRSGATLELLYASLGKYDHGDVAWSALSDDIRARLRDAMNEAYKVFGAKGLTPKPLNEVKIEPSSPGASWRLYGRTGKRTDLDVYVEGLARAQTIMDKAKRRKQPFCELPPCLAYLRTQLAPRNSPKVRLVWGFPFEINLIEGAFADAYQEALLCRNAPVLPRTNRWVAMAIDHVKQSGTP
Ga0068652_102860Ga0068652_1028602F077351IRGRVKVTIKAERLEGFWREVTRQWNRQVLNKVPGAQDLLLSEREWLVLWRGVLATRCLFVDPQGEYPRYRAIIPKRCEIPPLFWECLWNFGVYRTKWGADYLIVAEAEWPSQEEFSAVYAKWLNALSAYLAVMEMSRSLPSDVDAAPSFVVNVVERGESVTVQSSYPLEDITPRHTLWSAIALSPVPEYGPPRTVYMEWDRTLIASEILRAIKEEDD*
Ga0068652_103110Ga0068652_1031101F015874MTEELGHRLKEEPVGTTIRGRIKVTIQSEKIEAFWKAVTRQWNRLAAAKSPGCEDLLLTEREWLVLWRGLLAARCNYIDPEASYPVYRSLRPRRAEIPSLMWEALYCYGHVATEFGADYIVCATADWPSAEEFSQAYGKWLNALPIYLLVMECARSLPESERACPAFVLNVTERNGSLVVQSNYPLRDVRPRDTLWSVIALPPTPDLAVPKTVYLEWDPNSIIGEILSSMRKREGLNGA*
Ga0068652_103754Ga0068652_1037542F088951MRSLTPAQAGFPPASRDFSRQAASGNTLSHKVRRSDTRNSHATQCAESLSEKL*
Ga0068652_149982Ga0068652_1499821F014979VGRLIAPDGIGFKLKAPPGLDARTLAAYLSLIGTRALRIWEQSLLRDVIALIPREGYPGSNPGGLPREVVDQFLVEYFSREREVEPPRVYAVDPDHTVEARIGPLYSMSLVLPRDPTTTEWEPRGSAKSGPGGAPEPSPYGERVPGSDRSPGWLRRVREAIHASGIAQVWRLIRHGRWSRRGGGQGSRTA*
Ga0068652_151753Ga0068652_1517532F066811MQFNNPPAFTAPSMTDILNAATSIFNPFVGVLALAIGVTLGARMLGRIVNLF*
Ga0068652_155091Ga0068652_1550912F006938MLRIRVTIGRQNGLSEAEIVSDEPLSPMLGTVKTGHVVDRRAAELVEALFGKEVRDRARNYTRSGATLELLYESLGKYDHGDIAWSALNEDVRSRLADAMNEAYKVFGVKGLTPKPLNEVRVEPSSPGASWRLYGRTGKRTDLSVYAEGLARAQNIMEKAMRRKQPYCELAPCLAYLRTQLAPRNSPKVRLVWGYPFELN
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.