Sample 3300005389

Basic Information
IMG/M Taxon OID	3300005389 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0046783 \| Gp0111616 \| Ga0068654
Sample Name	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1800_B MetaT (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	23324921
Sequencing Scaffolds	15
Novel Protein Genes	24
Associated Families	13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	13
All Organisms → cellular organisms → Bacteria	2

Ecosystem Assignment (GOLD)
Name	Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa
Type	Environmental
Taxonomy	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	aquatic biome → hot spring → microbial mat material
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	USA: Wyoming: Yellowstone National Park
Coordinates	Lat. (^o)	44.539	Long. (^o)	-110.798	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F003460	Metagenome / Metatranscriptome	485	Y
F004367	Metagenome / Metatranscriptome	441	Y
F006938	Metatranscriptome	361	N
F007225	Metagenome / Metatranscriptome	355	Y
F011398	Metagenome / Metatranscriptome	291	N
F014979	Metatranscriptome	258	N
F015874	Metatranscriptome	251	N
F032666	Metagenome / Metatranscriptome	179	Y
F033056	Metagenome / Metatranscriptome	178	N
F039156	Metatranscriptome	164	N
F043425	Metagenome / Metatranscriptome	156	Y
F077346	Metagenome / Metatranscriptome	117	Y
F077351	Metatranscriptome	117	N

Scaffold	Taxonomy	Length	IMG/M Link
Ga0068654_101799	Not Available	523	Open in IMG/M
Ga0068654_102694	Not Available	551	Open in IMG/M
Ga0068654_105895	Not Available	633	Open in IMG/M
Ga0068654_106556	Not Available	1355	Open in IMG/M
Ga0068654_106606	Not Available	573	Open in IMG/M
Ga0068654_108450	Not Available	1043	Open in IMG/M
Ga0068654_108850	Not Available	878	Open in IMG/M
Ga0068654_109086	Not Available	991	Open in IMG/M
Ga0068654_110249	Not Available	741	Open in IMG/M
Ga0068654_146288	Not Available	578	Open in IMG/M
Ga0068654_149402	Not Available	873	Open in IMG/M
Ga0068654_155634	Not Available	516	Open in IMG/M
Ga0068654_155961	All Organisms → cellular organisms → Bacteria	625	Open in IMG/M
Ga0068654_159056	All Organisms → cellular organisms → Bacteria	788	Open in IMG/M
Ga0068654_159886	Not Available	819	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0068654_101799	Ga0068654_1017991	F014979	PGLDARTLAAYLSLIGTRALRIWEQSLLRDVIALIPREGYPGSNPGGLPREAVDQFLVEYFSREREVEPPRVYAVDPDHTVEARIGPLYSMSLVLPRDPTTTEWEPRGSAKSGPGGAPEPSPYGERVPGSDRSPGWLRRVREAIHASGIAQVWRLIRHGRWSRRGGGQGSRTA*
Ga0068654_102694	Ga0068654_1026941	F039156	AVVTIGLVAVVLTRLWVKQISLRLDESLEFDQKLVPLRNALAALRDATALAHSIARELQTLQQLREEASTVITELQSLREDFAQTYNNMLDDLTTHGETLVEMSCQLKEAHDKLDEAFLKNLIVRVVFNTEQGRSGEGLIAFLEANGYRINARLRALIVEFYNRDPGSSVRETTRLREEPVNE
Ga0068654_104908	Ga0068654_1049081	F006938	GLSEAEIVSDEPLSPMLGTVKTGHVVDRRAAELVEALFGKEVRDRARNYTRSGATLELLYESLGKYDHGDIAWSALNEDVRSRLADAMNEAYKVFGVKGLTPKPLNEVRVEPSSPGASWRLYGRTGKRTDLSVYAEGLARAQDIMEKAMRRKQPYCELAPCLAYLRTQLAPRNSPKVRLVWGYPFELNLIEGAFADAYQE
Ga0068654_104915	Ga0068654_1049151	F006938	LSGPEVYDMLHVRVTAAKADGLSEAVIESDQPLKPMLAVIREGHAVDREAMGLVERVFGKEVRDLARHYTRSGATLDLLYESLMKYDHSDVAWSSLNDDVKRRLQEAMNAAYKVFGVRGLKPKPLNEVAVEPSSPGASWRLYGRSGKRTDFSVYAEGLARAEIIFRRAMRRKQPFCQLAPCLAYLRTQLAKRGSPK
Ga0068654_105606	Ga0068654_1056062	F007225	MRKFAAITALLAVATTASFAQFGIYGATATGNSTGLGGGFQGGFVNGQEFDLLIRMDVPPGVPRFPRNGGGSLAFNFNPRYIDIKLFDTETGDPITISQAVANRPVGEIVNLGRYAFRGTTIRGVNLVGAAAVGARKNTDGTTIGVRIAFLSTSPSDFNATHAEPFVRTGPEDDDGNRRLPVVIVNWLNIRDDFGVNGTYTVQNE
Ga0068654_105895	Ga0068654_1058951	F039156	VLNPFSNMSVLIVVGAVITIGLVAVVLTRLWVKQISLRLDESLEFDQKLVPLRNALTALRDATAQAHSIARELQTLQQLREEASTVITELRGLREDFAQTYNNMLDDLTTHGETLVEMSCQLKEAHDKLDEAFLKNLIVRVVFNTEQGRSGEGLIAFLEANGYRINARLRALIVEFYNRDPG
Ga0068654_106556	Ga0068654_1065561	F077351	QYGKPVGRIIRGRVKVTIKAERLEGFWREVTRQWNRQVLNKVPGAQDLLLSEREWLVLWRGVLATRCLFVDPQGEYPRYRAIIPKRCEIPPLFWECLWNFGVYRTKWGADYLIVAEAEWPSQEEFSAVYAKWLNALSAYLAIMEMSRSLPSDVDAAPSFVVNVVERGESVVVQSSYPLEDITPRHTLWSAIALSPVPEYGPPRTVYMEWDRTLIASEILRAIKEEDD*
Ga0068654_106606	Ga0068654_1066061	F039156	DESLEFDQKLVPLRNALTALRDATAQAHSIARELQTLQQLREEASTVIMELRALREDFAQTYNNMLDDLTTHGETLVEMSCQLKEAHDKLDEAFLKNLIVRVVFNTEQGRSGEGLIAFLEANGYRINARLRALIVEFYNRDPGSSVRETTRLREEPVNEGL*
Ga0068654_107865	Ga0068654_1078651	F006938	ACVKMDREVIMLRIRVTIGRQNGLSEAEIVSDEPLSPMLGTVKTGHVVDRRAAELVEALFGKEVRDRARNYTRSGATLELLYESLGKYDHGDIAWSALNEDVRSRLADAMNEAYKVFGVKGLTPKPLNEVRVEPSSPGASWRLYGRTGKRTDLSVYAEGLARAQNIMEKAKRRKQPYCELAPCLAYLRTQLAPRNSPKVRLVWGYPFELNLIEGAFADAYQEALLAR
Ga0068654_108433	Ga0068654_1084331	F006938	IVSDEPLSPMLGTVKTGHVVDRRAAELVEVLFGKEVRDRARNYTRSGATLELLYESLGKYDHGDIAWSALSEDVRSRLADAMNEAYKVFGVKGLTPKPLNEVRVEPSSPGASWRLYGRTGKRTDLSVYTEGLARAQNIMDKAMRRKQPYCELAPCLAYLRTQLAPRNSPKVRLVWGYPFELNLIEGAFADAYQEALLAR
Ga0068654_108450	Ga0068654_1084501	F077351	QYGKPVGRIIRGRVKVTIKAERLEGFWREVTRQWNRQVLNKVPGAQDLLLSEREWLVLWRGVLATRCLFVDPQGEYPRYRAIIPKRCEIPPLFWECLWNFGVYRTKWGADYLIVAEAEWPSQEEFSAVYAKWLNALSAYLAVMEMSRSLPSDVDAAPSFVVNVVERGESVVVQSSYPLEDITPRHTLWSAIALSPVPEYGPPRTVYMEWDRTLIASEILRAIKEEDD*
Ga0068654_108609	Ga0068654_1086091	F006938	MIHIRVTSANQNGLSEAEIVSTQPLKPILAVVRTGHAVDRRAMDMVEYTFGKEVRDIAQGYTRSGATLELLYESLKRYDHGDMAWSSLDSDTRQRLTEAMNLAYKVFGAKGLKPKPLNEVEIEPSSPGASWRLFGRTGKRTDLDVYSEGLARAEVIMSKALEGRLKYCRL
Ga0068654_108850	Ga0068654_1088502	F015874	MTEELGHRLKEEPVGTTIRGRIKVTIQSEKIEAFWKAVTRQWNRLAAAKTPGCEDLLLTEREWLVLWRGLLATRCNYIDPETSYPVYRSLRPRRAEIPSLMWEALYCYGHVATEFGADYVVCATADWPSAEEFAQAYGKWLNALPIYLLVMECARSLPESERACPAFVLNVTERNGSLVVQSSYPLRDVRPRDTLWSVIALPPTPDLAVPKTVYLEWDPNSIIGEILSSMRKREGQNGA*
Ga0068654_109086	Ga0068654_1090862	F015874	MTEELGHRLKEEPVGTTIRGRIRVTIQSEKIEAFWKAVTRQWNRLAAAKSPGCEDLLLTEREWLVLWRGLLAARCNYIDPEASYPVYRSLRPRRAEIPSLMWEALYCYGHVATEFGADYIVCATADWPSAEEFSQAYGKWLNALPIYLLVMECARSLPESERACPAFVLNVTERNGSLVVQSNYPLRDVRPRDTLWSVIALPPTPDLAVPKTVYLEWDPNSIIGEILSSMRKREGPNGA*
Ga0068654_110249	Ga0068654_1102491	F077351	MSNDRPQYGKPVGRTIRGRVKVTVKAERLEGFWRDVTRQWNRQVLNKVPGSQDLLLTEEEWLTLWRGILATRCHYIDPEREYPRYRFIVPKRCEVPLLMWEALWNFGIYRSKWGADYVITAEAEWPSQEEMSRVYAKWLNALSAYLAVLEMSRSLPSDVDAAPSFVVNVIERGGGVTIQSSYPMEDVTPRHTLWAAIALPPVPDYGPPRTVYMEWDRTLITHEILRGLREEDD*
Ga0068654_146288	Ga0068654_1462881	F033056	ETHMRIQKPSPRQTAEQAAQQADAILSELQRTPPLLDVWCRLGVVWTKLGKPERAQNAFSAARALLAELPCDDTPGARLEIKYACTVLGTALALAGQVEQARQVVATTPCIERDTVLQRMAAHCTDVGSLQEALAVALAIQDATTQGMVLEPLAKAADESRQFALRDQALAQMRNPLRRADALYHIVRRRLE
Ga0068654_149402	Ga0068654_1494022	F011398	TIWRMTPSYDAFLYQSKHKRENLFRLSTDGDGTWVVFEPERLRPLYGQYTSLSAADLPGEQTWSFRFTYDASIPDFLSSQACRNNPDVRRGYPESLAKLLGDNFPGTVRIAKTYALLGNEYLTFAIVFSQPLDEVARLVTDRLGKTLNASLSPASVQIYGQRATRISLSRFLYQLNVEAIALDSQLTLVRGREVRFGGQSR*
Ga0068654_154172	Ga0068654_1541721	F077346	GIYHRWLDELLAAGSAEAAYLAASLWPAHDLMAKVTYRPAGWLVYRGQLDAEAERLILMEMLKGDYGPRTSLYGSFEYDDVPHPEQLSKQYIERHGFTHPICGLVEPIELQWDSDLKKRIQAVLAAPSWSEGVKGAAMLLYLSLNAFNELSAPLQELLNTLEQNLFKLDERHTNIINFHM
Ga0068654_155634	Ga0068654_1556341	F003460	MPKAARDERYFHDLQHAYEALHSVLTPRGLYAEVGMMLLVNMRRPSELRDVVVELVIRGRAIGSPVWRVAEGLRVPGRMKLRSVASVLFGLFMRAAYDIEAA
Ga0068654_155634	Ga0068654_1556342	F004367	NGRDRSDQWVESLLTNAGASVGRVLDDRQRRAVCLAVEVFAYLLAALPSEKVLVTDVIRLLKWYSEGVRHAEGSS*
Ga0068654_155961	Ga0068654_1559611	F032666	STIVGHPELGPVDLSGAGPYPALQSGVLPGNQVGIYTLFLSVHPDQNWLTGGPNDSTRWSSLSFSITYDSNYIDFVFRARDGSDVFVSSLPVNSVFSPYIQENPPARGVAAGRLEARNGSNVTVTFALAATANVNGVRSSSGFNGYLRDWFRDLYPEPSSGEELPLRVRVNGPAIAGLPNQTYSVSPGVQEGNIIIQVNPADSSRNVI
Ga0068654_159056	Ga0068654_1590562	F043425	MRQEMPPKVAWVLVGLAVLLAAGLVWWFLIGSDPAARAEVETVPPGYNPITGQQLSPLPQSR*
Ga0068654_159886	Ga0068654_1598861	F015874	MTEELGHRLKEEPVGTTIRGRIKVTIQSEKIEAFWRTVTRQWNRLAAAKTPGCEDLLLTEREWIVLWRGLLATRCNYIDPETSYPVYKSLRPRRAEIPSLMWEALYCYGHVATEYGADYIVCATADWPSVEEFAQAYGKWLNALPIYLLVMECARSLPESERACPAFVLNVTERNGSLVVQSSYPLRDVRPRDTLWSVIALPPTPDLTVPKTVYLEWDPNSIIGEILSSMRKREG*
Ga0068654_160733	Ga0068654_1607331	F006938	MLHIRVTSVGGGGLSEAELVSDVPLTPILAVVKTGHVVDRRAADNVSRLFGKEVRDLARHFTRSGASLELLYGSLRKYDHNDIAWSALDDDVRARLSDAMNEAFRVFGVKGLKPKPLNEVSVEPSSPGASWRLYGRMGKRTDFDVYTEGLARAQLIFERAK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300005389: Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1800_B MetaT (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences