NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300005475

3300005475: Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_0300_B MetaT (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300005475 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0046783 | Gp0111620 | Ga0068658
Sample NameAnoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_0300_B MetaT (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size10777031
Sequencing Scaffolds11
Novel Protein Genes16
Associated Families11

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Candidatus Thermofonsia → Candidatus Thermofonsia Clade 3 → Candidatus Roseilinea → unclassified Candidatus Roseilinea → Candidatus Roseilinea sp. NK_OTU-0061
Not Available10

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameAnoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biome → hot spring → microbial mat material
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationUSA: Wyoming: Yellowstone National Park
CoordinatesLat. (o)44.539Long. (o)-110.798Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002978Metagenome / Metatranscriptome516Y
F005746Metatranscriptome391N
F006938Metatranscriptome361N
F011940Metagenome / Metatranscriptome285Y
F015874Metatranscriptome251N
F016404Metagenome / Metatranscriptome247N
F021779Metagenome / Metatranscriptome217N
F031513Metagenome / Metatranscriptome182N
F039156Metatranscriptome164N
F060638Metagenome / Metatranscriptome132Y
F077351Metatranscriptome117N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0068658_100578All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Candidatus Thermofonsia → Candidatus Thermofonsia Clade 3 → Candidatus Roseilinea → unclassified Candidatus Roseilinea → Candidatus Roseilinea sp. NK_OTU-006560Open in IMG/M
Ga0068658_101423Not Available551Open in IMG/M
Ga0068658_106195Not Available582Open in IMG/M
Ga0068658_106555Not Available696Open in IMG/M
Ga0068658_107920Not Available538Open in IMG/M
Ga0068658_107960Not Available531Open in IMG/M
Ga0068658_108144Not Available644Open in IMG/M
Ga0068658_122051Not Available563Open in IMG/M
Ga0068658_125066Not Available514Open in IMG/M
Ga0068658_126517Not Available632Open in IMG/M
Ga0068658_126935Not Available797Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0068658_100578Ga0068658_1005781F021779NTPAFIGSAQVTSNQPLICIAKQIYDKDSPAIGPGDPDTVSRQSLGYNGINLSDAKTEIFLPIAWRINNQPTCGFWRYTGLIVQNAGTSNATVTVTAYTTAGAIVNTYNDPAPLTPLTPRGYNTRFGAYSTAVGSALGPNFDGVLRLTSTQPLVAVAENWQNCNSGFSPMTDSNITELN*
Ga0068658_101423Ga0068658_1014231F039156VLNPFSNTSALIVVGAVITIGLVAVALTRLWVKQISLRLDESLEFDQKLVPLRSALTALRDATAQAHSIARELQTLQQLREEASTVITELRALREDFAQTYNNMLDDLTTHGETLVEMSCQLKEAHDKLDEAFLKNLIVRVVFNTEQGRSGEGLIAFLEANGYRINARLRAL
Ga0068658_104686Ga0068658_1046861F006938SDEPLSPMLGTVKTGHVVDRRAAELVEALFGKEVRDRARNYTRSGATLELLYESLGKYDHGDIAWSALNEDVRSRLADAMNEAYKVFGVKGLTPKPLNEVRVEPSSPGASWRLYGRTGKRTDLSVYAEGLARAQNIMEKAMRRKQPYCELAPCLAYLRTQLAPRNSPKVRLVWGYPFELNLIEGAFADAYQEALLA
Ga0068658_104835Ga0068658_1048351F006938LSPMLGTVKTGHVVDRRAAELVEALFGKEVRDRARNYTRSGATLELLYESLGKYDHGDIAWSALNEDVRSRLADAMNEAYKVFGVKGLTPKPLNEVRVEPSSPGASWRLYGRTGKRTDLSVYAEGLARAQNIMEKAMRRKQPYCELAPCLAYLRTQLAPRNSPKVRLVWGYPFE
Ga0068658_106195Ga0068658_1061951F015874AAKSPGCEDLLLTEREWLVLWRGLLAARCNYIDPEASYPVYRSLRPRRAEIPSLMWEALYCYGHVATEFGADYIVCATADWPSAEEFSQAYGKWLNALPIYLLVMECARSLPESERACPAFVLNVTERNGSLVVQSNYPLRDVRPRDTLWSVIALPPTPDLAVPKTVYLEWDPNSIIGEILSSMRKREGPNGA
Ga0068658_106555Ga0068658_1065551F039156VLNPFSNTSALIVVGAVITIGLVAVALTRLWVKQISLRLDESLEFDQKLVPLRNALTALRDATAQAHSIARELQTLQQLREEASTVITELRGLREDFAQAYNNMLDDLTTHGETLVEMSCQLKEAHDKLDEAFLKNLIVRVVFNTEQGRSGEGLIAFLEANGYRINARLRALIVEFYNRDPGSSVRETTRLREEPVNE
Ga0068658_107920Ga0068658_1079201F077351TIKAERLEGFWREVTRQWNRQVLNKVPGAQDLLLSEREWLVLWRGVLATRCLFVDPQGEYPRYRAIIPKRCEIPPLFWECLWNFGVYRTKWGADYLIVAEAEWPSQEEFSAVYAKWLNALSAYLAIMEMSRSLPSDVDAAPSFVVNVVERGESVVVQSSYPLEDITPRHTLWSAIALLP
Ga0068658_107960Ga0068658_1079601F039156LVPLRNALTALRDATAQAHSIARELQTLQQLREEASTVITELRALREDFAQTYNNMLDDLTTHGETLVEMSCQLKEAHDKLDEAFLKNLIVRVVFNTEQGRSGEGLIAFLEANGYRINARLRALIVEFYNRDPGSSVREATRLREEPVNEGL*
Ga0068658_108023Ga0068658_1080231F006938GPEVYDMLHVRVTAAKADGLSEAVIESDQPLKPMLAVIREGHAVDREAMGLVERVFGKEVRDLARHYTRSGATLDLLYESLMKYDHSDVAWSSLNDDVKRRLQEAMNAAYKVFGVRGLKPKPLNEVAVEPSSPGASWRLYGRSGKRTDFSVYAEGLARAEIIFRRAMRRKQPFCQLAPCLAYLR
Ga0068658_108144Ga0068658_1081441F077351TIKAERLEGFWREVTRQWNRQVLNKVPGAQDLLLSEREWLVLWRGVLATRCLFVDPQGEYPRYRAIIPKRCEIPPLFWECLWNFGVYRTKWGADYLIVAEAEWPSQEEFSAVYAKWLNALSAYLAVMEMSRSLPSDVDAAPSFVVNVVERGESVVVQSSYPLEDITPRHTLWSAIALSPVPEYGPPRTVYMEWDRTLIASEILRAIKEEDD*
Ga0068658_122051Ga0068658_1220512F016404MTTEELLTDESRAAVLRALLMIVLSDEHPASARVAAARLFLSQFDEQPNADQNVLVIVDEAAFVKTV*
Ga0068658_125066Ga0068658_1250661F011940TPPPDGSDMSWDGSLVGDLFDGLEALRRAVAPPASRICDLPAPVLADAPELHGMRDAFPDFVLGLCNFFSIASPVLGFVRFPVTLMVIGFAFWTAWRVFRSLS*
Ga0068658_125066Ga0068658_1250662F060638MDWLEDAISKIVGWLDQISAAVHNAIIGWINGLIDIWNGWMDSLLHPAQAMPSIPQLRWVVDW
Ga0068658_126517Ga0068658_1265171F002978VSNLRDWRVTVVPWADRRLWFIQARRGRRVVWGVVYDAADPDSVALARRAIATLRSAGADCSALPAVLPGSPGAPGA*
Ga0068658_126517Ga0068658_1265172F031513DVGGWRVLPAVYGDSGIVADGVTYPAALPALRAGRELVWVARCESAALIEHQALERAREAAALASLWRGGGQWLDLMRVLGVVLPAVFAYFTWAQVSALQSLVAQILALVGER*
Ga0068658_126935Ga0068658_1269352F005746MPSTTHTLRLMAAFPLVSHRYRLLLAKAVGRWVHASGFDWTKERVSALVQYLLKLRAGENPCRPPWWSSRYLSYAERVATTASFEKFLQLVQAWRTALTAYGRLKSVPSRKDVEKFEKAVGSARILTVPLASGRVVEVDTEDWRSRFPFRAHFGVSPRQVLPEVRIHREVFPNNPLSLKLTTGKGYYTPTGEELFRDAWWVMQDHVLHPPGTVPAYWPMLPVL
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