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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300005483 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0046783 | Gp0111643 | Ga0068681 |
| Sample Name | Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_2300 MetaT (Metagenome Metatranscriptome) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 26865667 |
| Sequencing Scaffolds | 4 |
| Novel Protein Genes | 6 |
| Associated Families | 6 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 4 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | aquatic biome → hot spring → microbial mat material |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Wyoming: Yellowstone National Park | |||||||
| Coordinates | Lat. (o) | 44.963 | Long. (o) | -110.715 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000855 | Metagenome / Metatranscriptome | 859 | Y |
| F002970 | Metagenome / Metatranscriptome | 517 | N |
| F004307 | Metagenome / Metatranscriptome | 444 | Y |
| F004791 | Metagenome / Metatranscriptome | 423 | Y |
| F016404 | Metagenome / Metatranscriptome | 247 | N |
| F081391 | Metagenome / Metatranscriptome | 114 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0068681_101385 | Not Available | 2755 | Open in IMG/M |
| Ga0068681_151013 | Not Available | 1031 | Open in IMG/M |
| Ga0068681_159148 | Not Available | 627 | Open in IMG/M |
| Ga0068681_165846 | Not Available | 731 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0068681_101385 | Ga0068681_1013852 | F004791 | MPEPATIYDVDAIRVDRGVLTIRGAAKLLNRELTAPVIARLVRNAIGDQADRFPIGALKVVYESVLPKIFEPDSAIRSRVEALMPNIATITLGEYHQFLEASERGIAFPEVAQTLLTKAYGDGILEEPYAAAALLLKKIFDLVGEEGKG* |
| Ga0068681_101385 | Ga0068681_1013854 | F002970 | MSYSTVVDIIEMLANLNVQYNNAVVPTLRLTSQASWSDAAQLPARIIPVLGGLRLVESGVYTATRATRAVWEIDDLLLVRDVGMGRGVADTATALVEYIEDYVAKLRFAWLQRGDVQLINVSGVVDVIKYGERAYEGVTMTTRFAHLVRSPSI* |
| Ga0068681_151013 | Ga0068681_1510132 | F000855 | MDWLEDIWSKIVSWSDELSASLYNAVVEWINSVVAVWNGWMDALLHPADALPSVPQLRWVVDWLSDIVDYTALMYMLVDYVAYAQVVQQALIAQLTIVSIGLGFRAWLVIRRVVLVS* |
| Ga0068681_159148 | Ga0068681_1591482 | F016404 | VETDALTEENRNAVLWALLHLALDPDAPAGARVAAARLFLSQFGETNAERDVLVVVDDAAFVETV* |
| Ga0068681_165846 | Ga0068681_1658461 | F081391 | VGTKKSRSEPRWKRKEREVIKFLQAAFGRVSDPTLARLLTRTGRVGHLTRFGFDGIVGNEPGFIVEVKARKGMLTKQTIEA |
| Ga0068681_165846 | Ga0068681_1658462 | F004307 | MFKELVKLGDSNDERPVLNGAYIGRFLGVKERQRPTFDTRLNSEPELEDVFVFEFEVDDEELPQPIRVAKWVRKPPRLSHPGKNGKVSNLYKVIAALYGVSQMTDEQLQNAEEFVISAVGREYQLTIETKPSGWYEIIHVAPVRRARRKEVMSGNEEVPF* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |