NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300005489

3300005489: Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_1800 MetaT (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300005489 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0046783 | Gp0111639 | Ga0068677
Sample NameAnoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_1800 MetaT (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size45130751
Sequencing Scaffolds12
Novel Protein Genes12
Associated Families10

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available8
All Organisms → cellular organisms → Bacteria4

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameAnoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biome → hot spring → microbial mat material
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationUSA: Wyoming: Yellowstone National Park
CoordinatesLat. (o)44.963Long. (o)-110.715Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002229Metagenome / Metatranscriptome580Y
F004791Metagenome / Metatranscriptome423Y
F005302Metagenome / Metatranscriptome405Y
F007404Metagenome / Metatranscriptome351Y
F065815Metagenome / Metatranscriptome127N
F070748Metagenome / Metatranscriptome122Y
F073601Metagenome / Metatranscriptome120Y
F081391Metagenome / Metatranscriptome114N
F084273Metagenome / Metatranscriptome112N
F092122Metagenome / Metatranscriptome107Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0068677_100728Not Available3125Open in IMG/M
Ga0068677_101801All Organisms → cellular organisms → Bacteria3406Open in IMG/M
Ga0068677_105517Not Available659Open in IMG/M
Ga0068677_107208Not Available1793Open in IMG/M
Ga0068677_110121All Organisms → cellular organisms → Bacteria2534Open in IMG/M
Ga0068677_113728Not Available791Open in IMG/M
Ga0068677_115750Not Available685Open in IMG/M
Ga0068677_122417All Organisms → cellular organisms → Bacteria1300Open in IMG/M
Ga0068677_144063Not Available619Open in IMG/M
Ga0068677_160934Not Available1414Open in IMG/M
Ga0068677_161270All Organisms → cellular organisms → Bacteria1496Open in IMG/M
Ga0068677_166701Not Available539Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0068677_100728Ga0068677_1007281F081391VGTKKSRSEPRWKRKEREVIKFLQAAFGRVSDPTLARLLTRTGRVGHLTRFGFDGIVGNEPGFIVEVKA
Ga0068677_101801Ga0068677_1018014F007404MELIDIFQILAAGHQHLTLVDYLYNALAGAIGALTAYLADNEGEVFLPRYDREYHSVELGALGRVLTGAGAGVIVGYSGFVPFAAGIIAPAILPFALDKLMEWFEEKQK*
Ga0068677_105517Ga0068677_1055172F004791MPEPATIYDVDAVRVDRSVLTIREAATLLNRELAAPVIARLVRKAIGDQADRFPIRALKAVYERVLPQIFEPDAAIRARVEGLVPNVTTITLGEYHQFLEASERGIAFPEVAQTLLTKAYGDGIL
Ga0068677_107208Ga0068677_1072083F005302MAHFGVIQGLYAGNFAVEISTNGTIWTAVSDATVKIDDVELSRPSGEAYVGGSSDYATVTIGKREPVEVTLTFLYDETTNSATNTIYDQFESPTPVLAVRWSPTGVKPNARAYATSNDGTTTGLGVITNVTLSALDPSEAEPYVAMVTVRAPTLRQYQLGAAPVDLSG*
Ga0068677_110121Ga0068677_1101214F073601MLQAKATCLVMVLPAKRREGQRMFWRLHFAWRCAIKIMACGRIIRTLPVEKKAFVGMGVLLQQG*
Ga0068677_113728Ga0068677_1137281F004791EPATIYDVDAIRVDRGVLTIRGAAKLLNRELTAPVIARLVRNAIGDQADRFPIGALKVVYESVLPKIFEPDSAIRSRVEALMPNIATITLGEYHQFLEASERGIAFPEVAQTLLTKAYGDGILEEPYAAAALLLKKIFDLVGEEGKG*
Ga0068677_115750Ga0068677_1157501F073601LQAKATCLVMALPSKRREGQRMFWLLRFAWRCAIKIMACGSIIRTLPVEKKAFVGMGVLFQQG*
Ga0068677_122417Ga0068677_1224173F002229MVTLLTADGVEEIDYLPSDAEIRTSLDDAGLYGMVVDGVTWIRLSSGVGWWTVLAGRRVAATLAALGWCWVTDDGRGYWSPTLASVASEACAMLGVEVDDGD*
Ga0068677_144063Ga0068677_1440631F092122MFNKLLRHLGISPKPEEAQGFDNPDGVEVRVTIEIAKEAMKKLIDSTLAAVSNMREMVLSVGLNPLPEVMQKAYEGLRFVIGWLTTPFPNTVSGSATG*
Ga0068677_160934Ga0068677_1609341F065815PTEETSVTDAKKNNTSTPEVEQQSKSGFYQDLNSVLLVTILSLLIYTIVGSGLSWIVSWGLAQANLYPWVFNQSPILLWAIFGLVSMLIIGVTMVQVESLVETRILPKLQKFSQPTLLLVNFLVLIGLILGMYWLVSNFVNYLNITFWLK*
Ga0068677_161270Ga0068677_1612702F084273MKSVIRAVALAAVLLLAAGVADAAAVDKNILACGQNVGRLILSDPAVYDDGTLGGVTVQGSFSGNYPPLRNGIEIRWVQLISTTHPLNTNAGANIPYFDPGELDMTGDYDPFYWNTTLQGKNNNNYPQFWYKNYQFNGGQGITFYDQPKRLKSSAPVSWLAELNLVCWETGTKNFSVLWTGTYGFNIAQNGNVTVNGWNELANPAWLTQARLNQYFQNWTMSDACRNCLVPEPVFLQMGALLGMSGLGVVASRRRAGRRSS*
Ga0068677_166701Ga0068677_1667011F070748MKSFEEQAAFGLPFERVIAQTAALLLFPDRPDLELFRLPEHSAIDFLLLDQQKPVAALEVKRRSVHSTAYET
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