NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300005927

3300005927: Saline lake microbial communities from Deep Lake, Antarctica, in enrichment culture - Antarctic Deep Lake Metagenome VIREN14



Overview

Basic Information
IMG/M Taxon OID3300005927 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0114820 | Gp0116315 | Ga0075130
Sample NameSaline lake microbial communities from Deep Lake, Antarctica, in enrichment culture - Antarctic Deep Lake Metagenome VIREN14
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size45224989
Sequencing Scaffolds26
Novel Protein Genes26
Associated Families23

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Haloferacalesvirus1
All Organisms → Viruses → Predicted Viral2
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Natrialbales → Natrialbaceae → Natronorubrum → Natronorubrum halophilum1
Not Available14
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales → Halobacteriaceae1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria2
All Organisms → cellular organisms → Bacteria3
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Halorubraceae1
All Organisms → cellular organisms → Bacteria → Proteobacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSaline Lake Microbial Communities From Various Lakes In Antarctica
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake Enrichment → Saline Lake Microbial Communities From Various Lakes In Antarctica

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biome → saline lake → lake water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Hypersaline (saline)

Location Information
LocationDeep Lake, Antarctica
CoordinatesLat. (o)-68.5563Long. (o)78.1877Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002325Metagenome571Y
F003128Metagenome506Y
F011984Metagenome285Y
F035608Metagenome / Metatranscriptome171Y
F043706Metagenome155Y
F047393Metagenome150N
F047394Metagenome150N
F051583Metagenome144N
F054792Metagenome139Y
F055308Metagenome139Y
F064414Metagenome128Y
F067270Metagenome125Y
F075651Metagenome118Y
F075727Metagenome118Y
F077964Metagenome117Y
F084902Metagenome112Y
F091299Metagenome107Y
F094519Metagenome106Y
F094632Metagenome105N
F096357Metagenome104N
F100063Metagenome103N
F102170Metagenome102N
F104109Metagenome101N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0075130_100041All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Haloferacalesvirus46821Open in IMG/M
Ga0075130_102080All Organisms → Viruses → Predicted Viral1782Open in IMG/M
Ga0075130_102184All Organisms → Viruses → Predicted Viral1715Open in IMG/M
Ga0075130_102250All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Natrialbales → Natrialbaceae → Natronorubrum → Natronorubrum halophilum1678Open in IMG/M
Ga0075130_102281Not Available1666Open in IMG/M
Ga0075130_102580All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales → Halobacteriaceae1514Open in IMG/M
Ga0075130_102662All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria1479Open in IMG/M
Ga0075130_102921All Organisms → cellular organisms → Bacteria1391Open in IMG/M
Ga0075130_103122All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria1324Open in IMG/M
Ga0075130_103830All Organisms → cellular organisms → Bacteria1155Open in IMG/M
Ga0075130_104432Not Available1048Open in IMG/M
Ga0075130_105226All Organisms → cellular organisms → Bacteria941Open in IMG/M
Ga0075130_105387Not Available924Open in IMG/M
Ga0075130_105826Not Available882Open in IMG/M
Ga0075130_106123Not Available856Open in IMG/M
Ga0075130_106124Not Available855Open in IMG/M
Ga0075130_106185Not Available850Open in IMG/M
Ga0075130_107559All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Halorubraceae751Open in IMG/M
Ga0075130_108878All Organisms → cellular organisms → Bacteria → Proteobacteria681Open in IMG/M
Ga0075130_109449Not Available656Open in IMG/M
Ga0075130_111016Not Available601Open in IMG/M
Ga0075130_111868Not Available573Open in IMG/M
Ga0075130_112636Not Available553Open in IMG/M
Ga0075130_113629Not Available529Open in IMG/M
Ga0075130_114357Not Available513Open in IMG/M
Ga0075130_114748Not Available505Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0075130_100041Ga0075130_1000413F051583MTLHVPLTVGRSAPEGTQPNMDYTNPEDVANIDEPTRQQEIGLLSGLIDGKFVCVNHRGFLVNRTDNGSIELSRDGEVLGGRYYVTENNFAGLIEWLNAKAALYGETA*
Ga0075130_102080Ga0075130_1020802F075727MERLNKKGWVARDFIIAMLLFSGTLAMFVLMIGSLASDYDNTDVVDAEFSAKFDKFSEDTDRAGEMWKSATSEGGLSLVGTADLLFFSTFRVISLVFSSVVAAGQQMAGFGEFFGIPSEISSIFMVLIFTILTVSIVFIIISSIRSGKEL*
Ga0075130_102184Ga0075130_1021841F100063SFDLWIRGLDRRGEGDRIEIDVSGVSVGECCGLGVLQGPDETRVDRSYQRYLNGTPDGELRYVVMIRDEIETDSDTEEVEIDANTVQLHPITGNYLPESIDGYVFGKID*
Ga0075130_102250Ga0075130_1022502F047394MTASTQPTETRAQTTNGSFQTDVSALQEMTERAVEILDSHGEPVTIARLVGTVVRLGARDEYRFETIVRVAQQYIDEECGGADR*
Ga0075130_102281Ga0075130_1022811F094519MDMIKQPEQLTAGVTMIGTSSWGSQTGGIGSIMGSTWSSKIIFDAQPDRVLSKYFIEFNDLMGNNDVTIVIPKIGDVNLMGGRAGSIEGVARVLTKFDSADNITVNLTSADVKLGGCSVSFETASATRVSIIEMAH
Ga0075130_102580Ga0075130_1025801F003128MQIDVSASDIKSEKRADDRGRVTLGSEFAGKTVTVAVLEVKDE*
Ga0075130_102662Ga0075130_1026623F003128MQIDVSASDIKSDRKADDRGRVTLGSEHAGKTVTVAVLEVEDEDDVRTDEYPH*
Ga0075130_102921Ga0075130_1029212F054792MAEQKINVKKLEIGIIKVTIIGDSPYMPEPMDMAVLEKYNKIKSKQNYDKDDLSEEEKVKAKFYYTEDNKYGIPARAIYNSMIRGSSYLFDIKQGGMRNIKEGVTIKGDILPLKFKKQTEICHWGRTSGMKGSPRKILRNAFYDWEVEITVEFNKANLSAEQIINVLNWAGFHIGVGGFRKEKTGNFGSFHIDLK*
Ga0075130_103122Ga0075130_1031221F011984MRPIICDCCQIRIDDSWAGPALEVKVHNGVDTDVSGDYCVDCAGDISDAIRSVIEDNKSDSINE*
Ga0075130_103830Ga0075130_1038303F064414MGMSDITSKLPFIGGEGGGSNIIYLLIGFAVLLICGFALWWFLKKRKTWNIKVEFKIPRNIKKVRTKEGTIKIIGTLNKEWGKGFYDAKKGSVFIKRKGKKAVAMKPFDVKQYLSTGNILTVVQTGIEDYRPIRDESYIELKDIDGSEGALVQAVIDTSESKSWKNTFEREAKMTYSIKNWIAEHGALVAM
Ga0075130_104432Ga0075130_1044322F035608MSLLDTNKIIRDYLTTSSTIVDPLIALVGARIYCPRIPENGTLPAISYFTRGGSATPYIPDMPNPSVQFDCWAADPIDAREIYRKLYDALQGIQNIAVGSNYILSAIEEGQGQDLVDEFIPNYFRTLCFFSIMLR*
Ga0075130_105226Ga0075130_1052262F077964MKTKRLLIVFSLILASFILMLYSTYAFAQTAESKSSPPTIQKISKTSYYYNYNITEVQKEPEGGGEAETFYQYNYVKIKGKPTKRKVLDAIEAAESSTVTAEVEAVATERSTAKTQLADIAALSYAQVDTYVDNTFGNLPAAQKNALKKLYKTVLAMLKQM
Ga0075130_105387Ga0075130_1053871F091299MKEEKENDKLENITGSGIEVTIKGKEYKLGIFGMRDLADFRQYIKGQRIKIIQATIVSMEEKLILINSILDSNVNETKELQTMDGVTFMLWRSLKKYQPELTLADVDDMIDLDNISEISNVLMNIGGKVKNSQKRAKKV*
Ga0075130_105826Ga0075130_1058264F075651NAMVKDEKKAVKQKAMFYFSEKLKCHVKKVPTGFVNGIIKSELENNTFYWFEDLRTHGKDERLFLDEIFDIKDYEDEVEE*
Ga0075130_106123Ga0075130_1061232F075727MINKINKKGWVARDFIIAMLVFSGVLAMFVVMIGSIANDYDNTDIISPDFSDKFDKFSENVDTGGEMWAASTGEGGLSLVGTADLLFFSTFKVISLVFDSVNIAWTQMVEFGEFFGIPSVISNIFVG
Ga0075130_106124Ga0075130_1061243F043706MRPILYGILSTALLVNLLFMALDTGQPSVWLLILCAVAIIFAGGAENRGSGR*
Ga0075130_106185Ga0075130_1061853F084902INNIAPKLRQLAGYEDGAGKGTYNTVSTDIKYEINKENLLHEIHKEDVLPAFREAYYNEAVNREI*
Ga0075130_107559Ga0075130_1075593F104109FMQELLNYVPEVIVVGNIEFAVAGAALALGFPKAARWVVERRTSTDLNGDGHVGKPPGDTSESQVEDAADRTGDK*
Ga0075130_108878Ga0075130_1088781F096357MNNLLDHPIIKRLHRESSVTLTDLLDRKLFIEPPAEPCGHIHPSAWDLFYQEDLQPPESERLRAARKRNPRLILAAALVVAGATGKLSEEQKNMAFYFTRYVEAHEYELDQLVRRSTGSHNSAEIRKEEAAERMETAFSLWLKLDKPERDRCAIIAKRMGYPVDTVRGWKRKGWRSG*
Ga0075130_109449Ga0075130_1094492F102170MSDDDETVIVMTKGRVYHTDETCKRITDRAREWDLDEALNDGRYECGHCQADENLGSKHHGEHLATKLSKADPDEVAPTEFDRERASVSLAWFVAVWLAIMAASTFTGVMLYFAGVLL*
Ga0075130_111016Ga0075130_1110161F075727NKKGWVARDFIIAMLVFSGVLAMFVVMIGSVANDYDNTNIISPDFSDKFDKFSENVDTGGEMWAASTGEGGLSLFGTADLLFFSTFKVISLVFDSVNIAWTQMAEFGEFFGIPSVISNIFVGLIFTILTVMIVFIIISSIRSGKEL*
Ga0075130_111868Ga0075130_1118682F002325QPNTTYVVFEYQSGDWDNGRVLSGVSERQMTALASSDTNNWRTYAGSNLNGSNDLGIQQMTAVFDGANSIIREDGVETAVGDAGNRDLGGLSVGYDAWDFDNYGKRRYADAYVSEIVVVNSGSVDLDFENQLLEKWGITA*
Ga0075130_112636Ga0075130_1126361F055308AKTSSGIGTFPYGFYDFEEFTDGQDIIANDAAFTAANDSSYGDTTPTFTAYNSYAKQGSVGSQFTTDVLEGVQYEMPQTIDSSTESKWVREFWMKGTETTSNATTHGMSDVVDASNTEMNIYGPSDGMNKGGVVRYYDGGGWVNIYSGISPGDWVWIHEEIDFPNSQTYTEVKDAPDGSVLGS
Ga0075130_113629Ga0075130_1136293F094632MQSTKQQIADRIAELEDKGMTGIDIARKIDVNVVTLYRYKAMLINRPHRRILKI
Ga0075130_114357Ga0075130_1143572F047393PKLLLGLLSVRGRPPPIAEAHRAIPRGYDPPANRQSVLAPSFRGRERAEFQPGLQPERRQTRPLTEARLFSLTPEGPHRLPQYYER*
Ga0075130_114748Ga0075130_1147482F067270MNLPPEFIEYLQDEIKHFDKELISILELPNVKSLRDRIKKDKRDTEEMLNLYYRMGKVNKLIKLVKSEMRKCNDRAMALLGHRLQRVTRKYDRHRDTSYDL*
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