NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300005963

3300005963: Hot spring microbial streamer communities from Conch Spring, Yellowstone National Park, USA - C T=80-84



Overview

Basic Information
IMG/M Taxon OID3300005963 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0067861 | Gp0054662 | Ga0081519
Sample NameHot spring microbial streamer communities from Conch Spring, Yellowstone National Park, USA - C T=80-84
Sequencing StatusDraft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size46964575
Sequencing Scaffolds16
Novel Protein Genes17
Associated Families6

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae1
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.3
Not Available7
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → Pyrobaculum ferrireducens1
All Organisms → cellular organisms → Bacteria → Aquificae → Aquificae → Aquificales → Aquificaceae → Thermocrinis → Thermocrinis ruber1
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum1
All Organisms → cellular organisms → Bacteria → Proteobacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Butyrivibrio → unclassified Butyrivibrio → Butyrivibrio sp. XPD20061

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSaline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biome → hot spring → spring water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationConch Spring, Yellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.5564135Long. (o)-110.8321631Alt. (m)N/ADepth (m)2194.56
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013155Metagenome / Metatranscriptome274Y
F021443Metagenome / Metatranscriptome219Y
F038745Metagenome / Metatranscriptome165Y
F043237Metagenome / Metatranscriptome156Y
F075483Metagenome / Metatranscriptome119Y
F100050Metagenome / Metatranscriptome103Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0081519_100074All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae19734Open in IMG/M
Ga0081519_100406All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.7344Open in IMG/M
Ga0081519_100540Not Available6083Open in IMG/M
Ga0081519_102220All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → Pyrobaculum ferrireducens2474Open in IMG/M
Ga0081519_102631All Organisms → cellular organisms → Bacteria → Aquificae → Aquificae → Aquificales → Aquificaceae → Thermocrinis → Thermocrinis ruber2215Open in IMG/M
Ga0081519_103060Not Available2023Open in IMG/M
Ga0081519_103745All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum1762Open in IMG/M
Ga0081519_104616Not Available1529Open in IMG/M
Ga0081519_104757All Organisms → cellular organisms → Bacteria → Proteobacteria1498Open in IMG/M
Ga0081519_105689All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.1329Open in IMG/M
Ga0081519_105701Not Available1327Open in IMG/M
Ga0081519_107898All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.1065Open in IMG/M
Ga0081519_109001Not Available976Open in IMG/M
Ga0081519_112181All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Butyrivibrio → unclassified Butyrivibrio → Butyrivibrio sp. XPD2006773Open in IMG/M
Ga0081519_112296Not Available767Open in IMG/M
Ga0081519_112895Not Available737Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0081519_100074Ga0081519_10007434F038745MDKAVMSICGELMQASLTFSAYYPLCLNSPSCAYAEAVERLIRRAASARDAEELIKVMDGRIKLEELGLPAPALKTLAEELGPEPRWLDALAASFFRLYLGIHRQRRLDGRDLALALCLWAQRRRREDPWNPLWRVIMLKPEKLYTAEEAREALAINEVLFRRLWRRALANEHAYGFQLILAALSLMAIPTRSV*
Ga0081519_100406Ga0081519_1004069F013155MELYQIIIVAIALVNLAVAVWLLRLIIPVWQTLRKVVFVVDQYDFDKLAKQFLNGEKPLSETIHIKATENKEEGYKEIIITRAYKRPLDPREVQENFVRQMAEKLQ*
Ga0081519_100540Ga0081519_1005405F100050MDDVFFPMDVIVRYILATLLALVGGLVGYYLIPYEPFGAVGNVLFMGALFGFIAGFLGFTGFFGNVVNAFLVSFILWFVLPGQWFVIWTGGNAGYMVGNVLGQLGRLSAVKKIEAEAL*
Ga0081519_102220Ga0081519_1022202F013155MELYQIIIVAIALVNLAVAVWLLRLIIPVWQTLRKVVFVVDQYDFDKLANQFLNGEKPLSETIHIKTTENKEEGYKEVIITRAYKRPLDPREVQENFVRQMAEKLQ*
Ga0081519_102631Ga0081519_1026312F043237MELERTARYIAQLSSRGYKYAVVGKLARYDKKLVKRLEYEGFVFYLCRFQTKKEVVEYCLERAEGTFRVYCLSAKPLEFPNAPLKLHYDEKTKRLRLLAQRSFINECLRVIERASSLKYPNHKMYTIKVNEALRNLYSILAYTYNDRERLRAIKRKVKHLFVSALKENYGIEPKKAMEEYRRFVVKFSDVLKKKQRANSSTS*
Ga0081519_103060Ga0081519_1030603F021443MKCLLNDEKLIFIFRFFSVSCYNGYGYYQTNGILSLAIMDLVFKIINQQKRKSIILKKRKPIIHLLNYVDILNSNFISNKFDITFSLKNNHKTQLVYNLHSYRNSYRRRYYKDFYKDNLKVIERKNLCIIRAEHDYASEIQPKNLNLVSMLMHILQKEEIDMIVGDGIIFYCVFLM*
Ga0081519_103060Ga0081519_1030604F021443MICLLNYKKISFVFTSSYVRCYNYVYNYYQINGMLSFAVIDLVFKIIKQQKGKYIILKKRKPIIHLLNYVDILNFNNNCNKLAITLPLKNNYKTQLIHNLYLHRNSYRRRYYEDLYKDRLKVIEHENLCIIRLEDDYDNTIQPKNLNLAAMLMHILEKKEVDMIDVSGIIFYCVFLM*
Ga0081519_103745Ga0081519_1037453F013155MELYQAVVIAIALANLAVTVWLLRLLLPLWRYLQKVVFVVDQYDFDRLVNQFLNGEKPLSETIHIKTTENKEEGYKEIIITRAYKRPLDPKEIQENFVRQMAEKLQ*
Ga0081519_104616Ga0081519_1046161F021443MKCLLNDEKLIFIFVFPSVLCYNGYSYYQTNGILSFAVMDLAFKIINQQKRKFIILKKRKSIIHLLNYVDILNSNFNGSKFDITFSLKNNYKTQLIYNLHSYRNSYRRRYYKDFYKDGLAVIERENLCIIRLEHDYASEIQPKNSNLVTMLIHILDKEGIDTLVGDGIIFYCVFLM*
Ga0081519_104757Ga0081519_1047572F038745MQISLVFSAYYPLCSGGPPCDFAEAVERLIRRAASARGAEELVEVMEGRVKLEELGLPAPALEDLAEELGPEPRWLDALAASFFRLYLDMHRRRRVDGRDLAFALCLWAQKKRREDPRNPLWRAAKLEPGRLYTEEEAREALEINEALFRRLWRRALAFHRGEKAYGFQLILAALSLMAVPPRSV*
Ga0081519_105689Ga0081519_1056892F013155MELYQIIIVAIALANLAVTVWLLRLLYPVWQTLRKVVFAMEHYDFEKLTQQFLNGEKPLAENVVIKTIDKKEEGYREISIIRTYKRPLDPREVQENFVRQMAEKLQ*
Ga0081519_105701Ga0081519_1057012F021443MICLFNYKKISFVFTSSYVKCYNYDYNYYQTNGMLSFAVMDLVFKIINQQKRKSIVLKKRKPIIHLLNYIDILNFNNNCDKLAITLPLKNNYKTQLMHNLYLYRNSYRRRYYEDLYKDGLKVIEHKNSCIIRLEDDYDNTIQPKNLNLASMLMHILEKKEVDMIDVSSVIFYCIFL
Ga0081519_107898Ga0081519_1078981F075483MIELLLVQAVTTAALAFFVIKLRRELWPMFAMAKSGEVGFWVRTVDVLAVETPQLDASKVVIKVRWLFSEEIHMKYRLRIYDVAMHPYRRHHYVRWRAWMQGDNRYKCEVEKPRGLSRIYTKAIDVFCREVKKDEKKEVVILPSRWRKRRYRRWTKPEPSRGAPP*
Ga0081519_109001Ga0081519_1090011F021443MKCLLNDNKLTFMFGSSYVTCRNYRNCGYSYYQTNGMLSFAAIDLVFKIIKIMKQQKRKSIVLKKRKSIIHLLNYVDTLNFNFNSNKFDIVFSLKNKYVRQLTYNLYLHRSLYRRRYYKDFYKDNLIVIERENLCIIRLEDDYVSRIQPKNLNLATMLMHILEKEEIDMIVGDGIISYCVFLM*
Ga0081519_112181Ga0081519_1121811F021443MKYLLNDEKLIFVFRSSYVTCHNYGYGYYQTDGILSFAVMDLAFKIIKQQKRKSIILKKRKPIIHLLNYVDILNSNFNSNKFDIIFSLKNNYKTQLIHNLHSYRNSYRRRYYEDLYKDGLIVIERKNLCIIRLEYDYASRIQPKNLNLVSMLMHILEKKEIDIDVNGIIFYCVFLM*
Ga0081519_112296Ga0081519_1122961F021443MKYLLNDEKLTFTFRSPYVTCHNFDYGYYQINGILSFAVMDLAFKIINQQKRKSIVLKKRKPIIHLLNYIDTVNSNFNSNKFDIIFSLKNKYETQLIHNLYLYRNSYRRRYYEDLYKDGLIVIERKNLCIIRLEYDYASRIQPKNLNLVSMLMHILEKKEIDIDVNGIIFYCVFLM*
Ga0081519_112895Ga0081519_1128951F021443MKYLLNDEKLTFTFKSSYVTCHNYSYGYYQTNGIFSFAVMDLAFKIINQQKRKSIVLKKRKSIIHLLNYIDTLNFNFISNKFDITLPLKNDYKTQLIYNLYLYRCLYRREYYKDFYKDGLIVIEHENSCTIKTEYDYASRIQPKNLDLATMLMHILEKEGIDTINGDGIIFYCVFLM*
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Biomedical Sciences Research Center "Alexander Fleming"
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