NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300006245

3300006245: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 159490532



Overview

Basic Information
IMG/M Taxon OID3300006245 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0052799 | Ga0099369
Sample NameHuman tongue dorsum microbial communities from NIH, USA - visit 2, subject 159490532
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size53629776
Sequencing Scaffolds11
Novel Protein Genes14
Associated Families14

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 2791
All Organisms → Viruses → Predicted Viral3
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonia → Candidatus Nanosynbacterales → Candidatus Nanosynbacteraceae → Candidatus Nanosynbacter → Candidatus Nanosynbacter lyticus1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas1
Not Available1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides thetaiotaomicron1
All Organisms → cellular organisms → Bacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051213Metagenome144N
F061927Metagenome131N
F071328Metagenome122N
F077404Metagenome117N
F078842Metagenome116N
F080166Metagenome115N
F081455Metagenome114N
F089057Metagenome109N
F090517Metagenome108N
F095633Metagenome105N
F097527Metagenome104N
F099453Metagenome103N
F103435Metagenome101N
F105379Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0099369_100208All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 27910091Open in IMG/M
Ga0099369_100821All Organisms → Viruses → Predicted Viral4650Open in IMG/M
Ga0099369_101043All Organisms → Viruses → Predicted Viral4066Open in IMG/M
Ga0099369_101368All Organisms → Viruses → Predicted Viral3436Open in IMG/M
Ga0099369_103171All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonia → Candidatus Nanosynbacterales → Candidatus Nanosynbacteraceae → Candidatus Nanosynbacter → Candidatus Nanosynbacter lyticus1981Open in IMG/M
Ga0099369_104420All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria1597Open in IMG/M
Ga0099369_105413All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus1384Open in IMG/M
Ga0099369_106296All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas1261Open in IMG/M
Ga0099369_111974Not Available848Open in IMG/M
Ga0099369_116995All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides thetaiotaomicron688Open in IMG/M
Ga0099369_128199All Organisms → cellular organisms → Bacteria502Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0099369_100208Ga0099369_1002082F051213MKASKLLWAVVVALTFVFTSCDWVGDEPTIEGKLDKFFDSQAQRKSFRILTGSGKPYNHKVDWHIIGITDPYSDTYLTKKVDTLSNGDLKISYDWVSFTVRENKSVIDVEVQENETGKVRAVYLNTNTSGRHITLPDMRVTQRAK*
Ga0099369_100821Ga0099369_1008213F089057MTNIIPIIAKKYNRKGDTSGSLKSLVSDLNCIDNVDDSLLFLSSIPRETKYTLDEVFDLITSDDIYIKIFGNVLTFLNMDLDYHRLLLNAIKSESYKIISIINESIPTPDLFLAKNNYECLSVALDKAFVIFDKILGMVVSQLLHTASSKEERIFGVFMTICIINREINKLASLCTGYLAITRDEVLVKDLMNESAMVAFQYMSTEDINNVVSDINSRTVLSRYLSNM*
Ga0099369_101043Ga0099369_1010434F105379MVIHFPLSQSDIESLLSISKLLKCDKILYDRNYINPIIGIGPEKSYFQTTSYMVDLSPHINNLLVNIYDLKNFGKITQLEPSKDNPEIAIHKPVVSVFNWDAEYVKACMNSLREYQIDDNIITRTDEFHNTDCYNELMAGSASTGAFRINVGGYMIDIPKSAIPTLKSDHVVATVYNAPNKDFNVLRFKITKRNGIVVNQSMLFLPY*
Ga0099369_101368Ga0099369_1013682F099453MNRFDIIELAQQTITFVHSAFNGKVNALDPYTRLNFVAGYLDKKTNIARTTPYGCIYVSLESFADTVEAYKFIDTDQIRNLALEIIIHELTHVDQLIDYRYIKFNNGYREEVERQCVKQSCQWILDNIQFIRSLGLVVIPEVYEERLVGLSDVTYAFKNPAVIVMSKLEHMIGKKFKEFNSTDIEIVYVDRLKNYYKIPVCVNRIYQNSQNLNDLGERLLNDKQYTIEYMEYGNSKLVIKITQGA*
Ga0099369_101368Ga0099369_1013685F080166LANFENYNKVVEVIFELNYKLTLKMEVTFNGILKRLGNDVRENFHTEYIVNSGSLTTNVKYRYRMKLSPKGEQTCVYIDWDNYDDLFNVLEESIKICDPENPRTPFKRTYSDKGDLLDIRCNSLQVKYQHLNDRFGNTIDLIPFVLVDEQSGLLTEAIRFRFNNELVYDVPISRLKGFRRFLMTYNSLLHTPAMARYMAMTPLLGSNRQNMMRS*
Ga0099369_101368Ga0099369_1013686F081455DPDYAEYELESLNPVEEINAQNVEIIDAVDAIQQPLENKDAGIAVNFSQMINQPAIQEEVAKVVTSVPEQGEPKIKVVFPQNEWILGNYVDYDSFNKIKESNADIIIRSVRVLNFKMSDPNAVAAFNNFIMKFNPECDPNKRLKYELIRHQGREKDIVVRLSTVVNNVKYYADIYADLNKIDLDHHLISSAKKR*
Ga0099369_103171Ga0099369_1031714F095633MRNYENSTEVGRREGLTEGELRAMGTLAMEATEELKKTTIRKETVLLGGIPFDSWDEFAKAVQEMAAHSYEPIPVEINTKRLIATAFLDDEGEMSVEERFVPEEVFIDLSRTRCDAEEDRNHKSYEFTCPALMEHPDGKLYLTRKAYVISVIDVNGSQEVDFNIIYGGLN*
Ga0099369_104420Ga0099369_1044202F078842MIISSIYKTVDNDGLIAHIYEHLLAQYVLKRLQDNEFFVLSDIILSAKTYGDTCFMDAELYSPEVKKAYDEALREFDKLVIPEDDILRAAGECGIEMNRNIVEVDRSELSKKLREVQISPWRKQIDMAYRKARNESSVNTLFRTSYIKYSKESDDLFRECVLEYSIDESHIQTPVDQALAAIVMQIVTLNFLTVVREKYTVYDRGDQWSEASISVGYRMFLGLLKKDDKIINQLSYDFLEYIKNLSSYVFCDNLQKALVRCSDNHKQVILNRSTLNAILGGCIIGGKGWLEMADSVRIRQMINSIELDIYEVNS*
Ga0099369_105413Ga0099369_1054131F097527MIYFKMEKIGNSTHNKEKKTRSENLVFNTIPAAGVEPARPCGHWILSSILA
Ga0099369_106296Ga0099369_1062961F090517MNRRILSFCGLLLGLLFLASSCKNKKDTPRLQLSSVELRQTVWNGTLEYKSAKRGSYSVYLNFLSDSEVEVSAYDSKDPTDPYYVQARYYYTLTDRIFTLKTQVDYELNPPMDKNTWYLIRKEPSLLVFQANAGNPAAEATLTLRKKL*
Ga0099369_106607Ga0099369_1066073F103435NQWNYMSQLINKLTYQYLIDSPEFENIFSEILFNQSEREFYEFYKAIDRFYNGSEIFITVGNDDYSDMVTQMVCSVLRRTYGIRPQIIYDIDDVHSIRDDIDFSPEGAQIAYLQRHTYLALDGKSTVEPLRVWYPFDMNSYTNALE*
Ga0099369_111974Ga0099369_1119741F071328ILHEWHHRHLQGFICHVNKDYKMSQKHWTFTHIIRYIEEYERNPLLIERMKWEFILEGEYIVEFVKLCKHLVLERTIAPKKHQAAAICLRYSSQLLLKKRRAIRRLGIEKEYVSAILRQYGIHYREYGDNEHRVFFLDTGINIYFSKHHQSFIYIIQRIEFSNEEYRSFILKVLPVKKSEW*
Ga0099369_116995Ga0099369_1169951F077404SINIAAGKSMLHRNAIYIPPALEQYADTTLLHQRFNVENKGNYLYTPFTEDNEPTIPFNYGFLHPLGERFYNCFMGKVDRILRPKADKGFIILTSYLVVLGDSYAFDTSNKDTSKLADLKYLDFRHIKRDFSYGHPYQGFTPNDRIELSNFVQSYGRQAALETANAWVMASYPFSLQSTKFENRYTRGRKLILTDGHSTLYLYFLMIDSVAPNFDTEVLPYIKGVFRF
Ga0099369_128199Ga0099369_1281992F061927NYIIMKNPIFILSAMFILGACSSESAKKAYNDSFRKTFIEEGVKSCIENSGLKENEAREYCECAMNKLNENLSNDEIIDISMDNPPKDLDERIDKAISSCIGK*
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