Sample 3300006258

Overview

Basic Information
IMG/M Taxon OID	3300006258 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063646 \| Gp0052819 \| Ga0099398
Sample Name	Human stool microbial communities from NIH, USA - visit 2, subject 159247771
Sequencing Status	Permanent Draft
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	83659129
Sequencing Scaffolds	9
Novel Protein Genes	9
Associated Families	7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal surface

Location Information
Location	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F026592	Metagenome / Metatranscriptome	197	Y
F042936	Metagenome	157	N
F044554	Metagenome	154	N
F047125	Metagenome / Metatranscriptome	150	N
F047126	Metagenome	150	N
F067845	Metagenome	125	N
F089054	Metagenome	109	N

Family

Category

Number of Sequences

3D Structure?

F026592

Metagenome / Metatranscriptome

197

F042936

Metagenome

157

F044554

Metagenome

154

F047125

Metagenome / Metatranscriptome

150

F047126

Metagenome

150

F067845

Metagenome

125

F089054

Metagenome

109

Scaffold	Taxonomy	Length	IMG/M Link
Ga0099398_100135	Not Available	83535	Open in IMG/M
Ga0099398_101558	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	10636	Open in IMG/M
Ga0099398_101615	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	10172	Open in IMG/M
Ga0099398_102621	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	5456	Open in IMG/M
Ga0099398_104432	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2478	Open in IMG/M
Ga0099398_105138	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2003	Open in IMG/M
Ga0099398_105389	Not Available	1866	Open in IMG/M
Ga0099398_106640	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1361	Open in IMG/M
Ga0099398_110020	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	770	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0099398_100135

Not Available

83535

Open in IMG/M

Ga0099398_101558

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

10636

Open in IMG/M

Ga0099398_101615

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

10172

Open in IMG/M

Ga0099398_102621

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile

5456

Open in IMG/M

Ga0099398_104432

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes

2478

Open in IMG/M

Ga0099398_105138

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes

2003

Open in IMG/M

Ga0099398_105389

Not Available

1866

Open in IMG/M

Ga0099398_106640

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

1361

Open in IMG/M

Ga0099398_110020

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes

770

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0099398_100135	Ga0099398_1001353	F089054	MLTKGKFLVSFEVPGHTKEYTEGFTEEMVIPYRTEELNPYLRYPNQEINNNHLHSEHIRLQIREILQIPLSDITIIDIISLP*
Ga0099398_101558	Ga0099398_1015584	F042936	MGRGGGKGRVWKTKEGIMKTSGIVDRGEDTIRNFEKVEQKGALTPPYLGKLYFRSRLRGKG*
Ga0099398_101615	Ga0099398_1016151	F067845	MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELAQQLGVAHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADSNMGYTGDLNKFLYWSGCYGVPEDVTVALLLDDSTAMTAQLYAPQADSAAAELLEDAAGHSELGAAFIDYNGTAYVVAVFR*
Ga0099398_102621	Ga0099398_1026213	F047126	VYLKTKKMTNISQTQAGFKSKSLGILCGFQGFLTQNPAALVETDDIFDVSDTPHGFSGLNTLRAAGVPNPPPPFAQRFIACFCSQTAAASQSKSAYILSSLESPCILCSLLRHFHILSKKLQKTC*
Ga0099398_104432	Ga0099398_1044324	F026592	RTVCQNRLRTASPQGIAALAVQGGVATLTERSDATFAGKQFSSADRE*
Ga0099398_105138	Ga0099398_1051383	F047125	MDVVLLLMVLGVMLSGFWAADALDHIRKEIICQEGKRRGWWS*
Ga0099398_105389	Ga0099398_1053892	F044554	SASPCIFFHTQAYVLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLFLSFPFSFRANFAQALFSSLLFVSDTRAKSILFLLFENEIAHLQGQYRFNSHRYCFSAFLVL*
Ga0099398_106640	Ga0099398_1066403	F026592	LRTASPQGIAALAAQGGVATLTERSDETFSVVQFSSADRE*
Ga0099398_110020	Ga0099398_1100201	F026592	LRTASPQGIAALAAQGGVATLTERSDATFSVKQFSSADGE*

Scaffold ID

Protein ID

Family

Sequence

Ga0099398_100135

Ga0099398_1001353

F089054

MLTKGKFLVSFEVPGHTKEYTEGFTEEMVIPYRTEELNPYLRYPNQEINNNHLHSEHIRLQIREILQIPLSDITIIDIISLP*

Ga0099398_101558

Ga0099398_1015584

F042936

MGRGGGKGRVWKTKEGIMKTSGIVDRGEDTIRNFEKVEQKGALTPPYLGKLYFRSRLRGKG*

Ga0099398_101615

Ga0099398_1016151

F067845

MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELAQQLGVAHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADSNMGYTGDLNKFLYWSGCYGVPEDVTVALLLDDSTAMTAQLYAPQADSAAAELLEDAAGHSELGAAFIDYNGTAYVVAVFR*

Ga0099398_102621

Ga0099398_1026213

F047126

VYLKTKKMTNISQTQAGFKSKSLGILCGFQGFLTQNPAALVETDDIFDVSDTPHGFSGLNTLRAAGVPNPPPPFAQRFIACFCSQTAAASQSKSAYILSSLESPCILCSLLRHFHILSKKLQKTC*

Ga0099398_104432

Ga0099398_1044324

F026592

RTVCQNRLRTASPQGIAALAVQGGVATLTERSDATFAGKQFSSADRE*

Ga0099398_105138

Ga0099398_1051383

F047125

MDVVLLLMVLGVMLSGFWAADALDHIRKEIICQEGKRRGWWS*

Ga0099398_105389

Ga0099398_1053892

F044554

SASPCIFFHTQAYVLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLFLSFPFSFRANFAQALFSSLLFVSDTRAKSILFLLFENEIAHLQGQYRFNSHRYCFSAFLVL*

Ga0099398_106640

Ga0099398_1066403

F026592

LRTASPQGIAALAAQGGVATLTERSDETFSVVQFSSADRE*

Ga0099398_110020

Ga0099398_1100201

F026592

LRTASPQGIAALAAQGGVATLTERSDATFSVKQFSSADGE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300006258: Human stool microbial communities from NIH, USA - visit 2, subject 159247771

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences