Sample 3300006294

Overview

Basic Information
IMG/M Taxon OID	3300006294 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063646 \| Gp0052474 \| Ga0099625
Sample Name	Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 765135172
Sequencing Status	Permanent Draft
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	40199665
Sequencing Scaffolds	7
Novel Protein Genes	8
Associated Families	6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2
All Organisms → Viruses	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal surface

Location Information
Location	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F043991	Metagenome	155	N
F074985	Metagenome	119	N
F097527	Metagenome	104	N
F101358	Metagenome	102	Y
F105377	Metagenome	100	Y

Family

Category

Number of Sequences

3D Structure?

F018385

Metagenome

235

F043991

Metagenome

155

F074985

Metagenome

119

F097527

Metagenome

104

F101358

Metagenome

102

F105377

Metagenome

100

Scaffold	Taxonomy	Length	IMG/M Link
Ga0099625_100069	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	45727	Open in IMG/M
Ga0099625_100344	All Organisms → Viruses	10496	Open in IMG/M
Ga0099625_100430	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	9155	Open in IMG/M
Ga0099625_100725	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	6483	Open in IMG/M
Ga0099625_102612	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2437	Open in IMG/M
Ga0099625_102785	All Organisms → Viruses	2310	Open in IMG/M
Ga0099625_104829	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1403	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0099625_100069

All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria

45727

Open in IMG/M

Ga0099625_100344

All Organisms → Viruses

10496

Open in IMG/M

Ga0099625_100430

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

9155

Open in IMG/M

Ga0099625_100725

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

6483

Open in IMG/M

Ga0099625_102612

All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria

2437

Open in IMG/M

Ga0099625_102785

All Organisms → Viruses

2310

Open in IMG/M

Ga0099625_104829

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus

1403

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0099625_100069	Ga0099625_10006914	F101358	LTQPITTDGTPKERAIHPDTHIIPKRQDAPHHQWNVLRSSGQLDEGWIDREIIDEDGTVLVRMTKPVNRSNIHRLEKCVPLAVLQEQNIDFTNAYLQRAYGVMVKDGRLQPATDTTHATTSSQEQQTEILPAQGGDTYEHLSGDSARQLVGSVAAKASDTEVDNSLLVERAREYAEQR*
Ga0099625_100344	Ga0099625_1003443	F105377	MRDFDKLPLLTPEEAFERAMEMGWNRLLFDHGYRVRGLNDWKGIETLLRQYDVDDAVIASFGLKRFEEIFDVFAMLSDRGWSLWQTSANVYVDGELRTVPAIRAHYCGD*
Ga0099625_100430	Ga0099625_10043012	F074985	MELTDGGWYKTPRIIKGEDFLAHIHDTYASGNAMYVEFKASEGEVRILEYRQLYDVDTESAVLFTINTYPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRFNLEQFDQLWLDQTFQKLHPVIVNHDGKFWYVMGLKLDVDADGSFWGLYLKRQDSDFMKEIRMPLTQKFIYNPISGSWFLDDPTQEIKDLEEIKQTLRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDSKTGEQKYLLDHIKAMHID*
Ga0099625_100725	Ga0099625_1007252	F018385	MAEYENQWGPYKEHSIEKDRDPVLDDPIIYGVNVKHFTVTVYSQDGRVNKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTTYMFTHDGLNELVFMPGSSRKTISRLYYEEVK*
Ga0099625_100725	Ga0099625_1007256	F043991	MSRKNTSVIDYFDLNGDLNEEAYEFEDVKLEEYIDKRSNVKPSWVGKYSHQMHFDLPDDTEVSFYKGLNIVCADINFAGGIRTILFKCRQKKNLTRFISRVLEIAQGDPSNVHPDFRA*
Ga0099625_102612	Ga0099625_1026123	F101358	MTEKYSASLPPRQENLLTQPITTDGAPEKRTTHPDTHSIPKRQDVPRHRWNVLRSSGQLDEGWIDREIIDKDGTVLVRMTKPVHRSNIHQLEKCVPLAVLQEQNIDFTNAYLQRAYGVMVKDGRLQPVADTTHATTSSQEQQTEILPAQGADTHEHLDGDSARRLVGSVAAKASDGEVDNSLLVRRALKR*
Ga0099625_102785	Ga0099625_1027852	F105377	VRNFDKLPLLTPEEAFDRAREEGGSAHPVFDRGYRVRGLDSWKTIETLLCQYDVQDITVASFGLKRFEEILDAIAMLHERGWHLWQTSANVYVDGEKRTVQAIRARYRVI*
Ga0099625_104829	Ga0099625_1048291	F097527	MIYFKMEKIGNSTYNKEKKTRSENLVFITIPAAGVEPARPCGHWILSPA

Scaffold ID

Protein ID

Family

Sequence

Ga0099625_100069

Ga0099625_10006914

F101358

LTQPITTDGTPKERAIHPDTHIIPKRQDAPHHQWNVLRSSGQLDEGWIDREIIDEDGTVLVRMTKPVNRSNIHRLEKCVPLAVLQEQNIDFTNAYLQRAYGVMVKDGRLQPATDTTHATTSSQEQQTEILPAQGGDTYEHLSGDSARQLVGSVAAKASDTEVDNSLLVERAREYAEQR*

Ga0099625_100344

Ga0099625_1003443

F105377

MRDFDKLPLLTPEEAFERAMEMGWNRLLFDHGYRVRGLNDWKGIETLLRQYDVDDAVIASFGLKRFEEIFDVFAMLSDRGWSLWQTSANVYVDGELRTVPAIRAHYCGD*

Ga0099625_100430

Ga0099625_10043012

F074985

MELTDGGWYKTPRIIKGEDFLAHIHDTYASGNAMYVEFKASEGEVRILEYRQLYDVDTESAVLFTINTYPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRFNLEQFDQLWLDQTFQKLHPVIVNHDGKFWYVMGLKLDVDADGSFWGLYLKRQDSDFMKEIRMPLTQKFIYNPISGSWFLDDPTQEIKDLEEIKQTLRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDSKTGEQKYLLDHIKAMHID*

Ga0099625_100725

Ga0099625_1007252

F018385

MAEYENQWGPYKEHSIEKDRDPVLDDPIIYGVNVKHFTVTVYSQDGRVNKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTTYMFTHDGLNELVFMPGSSRKTISRLYYEEVK*

Ga0099625_100725

Ga0099625_1007256

F043991

MSRKNTSVIDYFDLNGDLNEEAYEFEDVKLEEYIDKRSNVKPSWVGKYSHQMHFDLPDDTEVSFYKGLNIVCADINFAGGIRTILFKCRQKKNLTRFISRVLEIAQGDPSNVHPDFRA*

Ga0099625_102612

Ga0099625_1026123

F101358

MTEKYSASLPPRQENLLTQPITTDGAPEKRTTHPDTHSIPKRQDVPRHRWNVLRSSGQLDEGWIDREIIDKDGTVLVRMTKPVHRSNIHQLEKCVPLAVLQEQNIDFTNAYLQRAYGVMVKDGRLQPVADTTHATTSSQEQQTEILPAQGADTHEHLDGDSARRLVGSVAAKASDGEVDNSLLVRRALKR*

Ga0099625_102785

Ga0099625_1027852

F105377

VRNFDKLPLLTPEEAFDRAREEGGSAHPVFDRGYRVRGLDSWKTIETLLCQYDVQDITVASFGLKRFEEILDAIAMLHERGWHLWQTSANVYVDGEKRTVQAIRARYRVI*

Ga0099625_104829

Ga0099625_1048291

F097527

MIYFKMEKIGNSTYNKEKKTRSENLVFITIPAAGVEPARPCGHWILSPA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300006294: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 765135172

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences