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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300006307 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0063646 | Gp0052534 | Ga0099615 |
| Sample Name | Human subgingival plaque microbial communities from NIH, USA - visit 2, subject 764042746 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 152599698 |
| Sequencing Scaffolds | 13 |
| Novel Protein Genes | 13 |
| Associated Families | 13 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 2 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2 | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279 | 2 |
| All Organisms → Viruses → Predicted Viral | 1 |
| All Organisms → Viruses | 1 |
| All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis | 1 |
| All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonia → Candidatus Nanosynbacterales → Candidatus Nanosynbacteraceae → Candidatus Nanosynbacter → Candidatus Nanosynbacter lyticus | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales | 1 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctSdk10 | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Human → Digestive System → Oral Cavity → Subgingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal surface |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Maryland: Natonal Institute of Health | |||||||
| Coordinates | Lat. (o) | 39.0042816 | Long. (o) | -77.1012173 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F018385 | Metagenome | 235 | Y |
| F027205 | Metagenome | 195 | N |
| F030786 | Metagenome | 184 | N |
| F047127 | Metagenome | 150 | N |
| F054109 | Metagenome | 140 | N |
| F055792 | Metagenome | 138 | N |
| F081510 | Metagenome | 114 | N |
| F090517 | Metagenome | 108 | N |
| F092231 | Metagenome | 107 | Y |
| F095630 | Metagenome | 105 | N |
| F101358 | Metagenome | 102 | Y |
| F105377 | Metagenome | 100 | Y |
| F105380 | Metagenome | 100 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0099615_1000089 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 56893 | Open in IMG/M |
| Ga0099615_1000290 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2 | 33896 | Open in IMG/M |
| Ga0099615_1000518 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279 | 23889 | Open in IMG/M |
| Ga0099615_1000616 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279 | 21267 | Open in IMG/M |
| Ga0099615_1003870 | All Organisms → Viruses → Predicted Viral | 4325 | Open in IMG/M |
| Ga0099615_1004052 | All Organisms → Viruses | 4146 | Open in IMG/M |
| Ga0099615_1004517 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis | 3722 | Open in IMG/M |
| Ga0099615_1006017 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonia → Candidatus Nanosynbacterales → Candidatus Nanosynbacteraceae → Candidatus Nanosynbacter → Candidatus Nanosynbacter lyticus | 2884 | Open in IMG/M |
| Ga0099615_1008153 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia | 2281 | Open in IMG/M |
| Ga0099615_1015017 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales | 1444 | Open in IMG/M |
| Ga0099615_1032794 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales | 815 | Open in IMG/M |
| Ga0099615_1054656 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 567 | Open in IMG/M |
| Ga0099615_1057009 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctSdk10 | 549 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0099615_1000089 | Ga0099615_100008943 | F081510 | MKLPKLPNMQTIKSTAKSAMVTTKILGKKYAPFVLLGVGLAGYGYSVYSGVKSGKKLEATKAKYEAMDAAGEEYTRFEVVKDVAKDVAVPVAVATASTAAIVLGFAIQTNRLKAVSAALAMVTEEHARYRLRAKEVLDEATFKKIDAPLETKTVELDGKEVEVESIVPNEGDFYGQWFKYSSNYVSDDPDYNESYIKEAETYLVNRMMKKGVLTFGEVLDKLGFDVPRAALPFGWTDTDDFYIEWDAHEVFDDVKQEYDLQFYVRWKTPRNLYATTSFKDFVPKKTRKELN* |
| Ga0099615_1000290 | Ga0099615_100029044 | F105380 | MTIVELDTSQYVKQGRIFKKFDSNLLDSYMEGRQTQYNINLADLDDQISDGIVYADRSGKMIYKFGAKKIIQTAITKDLTITGLDDEFKMDYYSFWVPDIYLISFKSFNPDGGLYLAYHKKDEKHIYLTNIWPDSRNQDDTYFPNGKRLETKSICTGRMMDDIDSAEYSAWKNDPVTRASQYINKFINARGNADLDFVNSTLRRKVPNHNTKKFAEFLGSITKEQENVNTYEEFIEWTKTTEWFK* |
| Ga0099615_1000518 | Ga0099615_100051814 | F090517 | MNRRILSFCGLLLGLLFLVSSCKKDTPRLQLQLSSVELRQTVWNGTLEYKSAKRGSYSVYLNFLSDSEVEVSVYDSKDPTDPYYVQARYYYTLTDRIFTLKTQVDYELNPPMDKNTWYLIRKEPSLLVFQANPGNPDREATLTLRKKL* |
| Ga0099615_1000616 | Ga0099615_100061613 | F055792 | MEIASQALDSTSAVTHRILLLTTQLSESLLASFGAEDGVIAEAMVTRALESNLSIDSTLEEVGPVLIDKGDDGTEAGTTWGRYTLETLQKEGYILFEGSMLPCEARRVDSRSSVKSLDLESRIIGKAIEPVALPHVARLDEGIPLQRIGGLRDLLVTPDVSQADDL* |
| Ga0099615_1003870 | Ga0099615_10038703 | F054109 | MFKEKTYMTGRPKSKKGVKVHTAFKIYPKDKERAQIMADKLDMSLSAYINKAVLEKLAHDEKSEASTETN* |
| Ga0099615_1004052 | Ga0099615_10040525 | F105377 | VRDFNELPLLTPEEAFERAREMGWNRPLFDHGYRVRGLADWKAIETLLRQYDAEDAVIASFGLKRFEEIFDALAMLSERGWNLWQTVANVYVGGELRAVPAIRAHYRGD* |
| Ga0099615_1004517 | Ga0099615_10045173 | F101358 | LTQPITTDGAPEKRTTHPDTHSIPKRQDVPRHRWNVLRSSGQLDEGWIDREIIDEDGTVLVRMTKPVNRSNIHRLEKCVPLAVLQEQNIDFTNAYLQRAYGVMVKDGRLQPATDTTHATTSSQEQQTEILPAQGGDTYEHLSGDSARQLVGSVAAKASDTEVDNSLLVERAREYAEQR* |
| Ga0099615_1006017 | Ga0099615_10060175 | F095630 | MVYSSLYKAVENNGLLAHIYEHLLAQYVMKSLQGRGFFISSDIILTAKTYGDTCFIDAELYNPAAQKAYDEALQLFDEWDIPGDAALRVAGKCGIEMNRVVAELKQDELLRSLNMVQLSAWHQQSDLTYRKADDKSSVNTLFRVPYIKYSRKSKSLFPEYVLEYSVDEKYIQLPVDQALAAVVMQVAALNFLMMIREKHTVYDRGDQWSEASKSVGYRMFLGLIKKDDNIVDQLKREFMEYVQFLSASSFCDNLQEALVRCSHNYEQVLLGRDTLNSILGGCVIGGKGWLEMADSALIQQMLAAIELDVYDI* |
| Ga0099615_1008153 | Ga0099615_10081531 | F092231 | SKSRVITHRRIRQERNVMIIFAPQEFITWTNTLVQFPWPIQLNDFPPYAEKLGWKPTPRPTWFNVLPDNDDEITMISSDREGNVHNLFLYMASNEAEDAEGAAELNDHFVACVAAGREAWGEPFLLEAGDGPGVTWRFPGDMFTQVTNGSRAVLFQFFTPEGRWYFL* |
| Ga0099615_1015017 | Ga0099615_10150171 | F030786 | SSLQLLLKNGSATKGGNATGAKKANKISFADITDGDKSKVVDIKVKYFDDEGADKIFENNNNRILNTINSQHISYNSQSAEYSKPQLFLLYQSLKVDC* |
| Ga0099615_1032794 | Ga0099615_10327941 | F047127 | MKKTFAFILLSIISLAKAQLTDIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGEKRQAVRLWDKDIFYLEFTDRKMNKRVFRQIPELKKNGKLFEVMLQGDVSWYRRYFSYKADTWDANYEHEDYFVKGDEIVNIPVKGRYKKKLKAL |
| Ga0099615_1054656 | Ga0099615_10546561 | F018385 | MAEYENQWGPYKEHSIEKDRDPVLDDPIIYGVNIKHFTVTVYSQDGRVNKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTAYMFTHDGLNELVFMPGSSRKTISRLWCEEVK* |
| Ga0099615_1057009 | Ga0099615_10570091 | F027205 | PPPVLVPPGSVKGPRGPPLIERTHVASRLIVSADDILKAVKESEEFEKKALSEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQIRNRELADEIEKDLFAFMDYLLDEYDIPRRIKRSAK* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |