NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300006409

3300006409: Viral communities from the deep bioline of CORK borehole observatory U136A, on the Juan de Fuca Ridge Flank, Pacific Ocean - passive in situ filtration, Fraction 20



Overview

Basic Information
IMG/M Taxon OID3300006409 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0116231 | Gp0119593 | Ga0078977
Sample NameViral communities from the deep bioline of CORK borehole observatory U136A, on the Juan de Fuca Ridge Flank, Pacific Ocean - passive in situ filtration, Fraction 20
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Hawaii
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size16894439
Sequencing Scaffolds5
Novel Protein Genes7
Associated Families4

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available3
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Korarchaeota → Candidatus Korarchaeota archaeon1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameViruses Inhabiting Crustal Fluids Of The Juan De Fuca Ridge Flank
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Viruses Inhabiting Crustal Fluids Of The Juan De Fuca Ridge Flank

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Subsurface (non-saline)

Location Information
LocationJuan de Fuca Ridge Flank, Pacific Ocean
CoordinatesLat. (o)47.750184Long. (o)-127.740187Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042912Metagenome / Metatranscriptome157Y
F051940Metagenome143Y
F103293Metagenome101Y
F105221Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0078977_101298Not Available1385Open in IMG/M
Ga0078977_101990All Organisms → Viruses → Predicted Viral1100Open in IMG/M
Ga0078977_103885Not Available781Open in IMG/M
Ga0078977_103958Not Available776Open in IMG/M
Ga0078977_106242All Organisms → cellular organisms → Archaea → TACK group → Candidatus Korarchaeota → Candidatus Korarchaeota archaeon605Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0078977_101298Ga0078977_1012983F042912MIYDYLDTIIALILVIGCFILLGLGIDTEVKSIITMAAGWAFGSQYQARKVRKR*
Ga0078977_101990Ga0078977_1019902F105221MAVTLYYKGFDHTNSSDVEEEVTTITSTEAEPKLIKRVVVVQRLANDTNLYVYLEREKILDAIAIESSPVGNDPWSFPIDFKLPLGQTLTVKLKNQTAGSNGGVVGYIEYEITE*
Ga0078977_103885Ga0078977_1038851F051940VKLLENLIKFLRNDNADVQMIGVVIGILVTLIVAVLVFYNIAGSIDTEDIDAKLTGTPAENATDATLDQAGTFFSIAPIIAIVIVAVVILGYVSRIGGGG*
Ga0078977_103885Ga0078977_1038852F051940MKLLQIIKQLLRGDNANIQMIGGVVAILVTLIVAVLVFYNIAGSIDTEDIDKNFGGENETPAENATEATMDQAGTFFSIAPIIAIVAVAVVILGYVTRIGG*
Ga0078977_103958Ga0078977_1039581F051940MKLLQIIKQLLRDNNGNVQMIGGVVAILVTLIVAVLVFYNIAGSIDTEDIDKNFGGENETPAENATEATMDQAGTFFSIAPIIAIVAVAVVILGYVTRIGG*
Ga0078977_103958Ga0078977_1039582F051940VKLLENLIKFLRNDNADVKMIGVVIGILVTLIVAVLVFYNIAGSIDTEDIDAKLTGTPAENATDATLDQAGTFFSIAPIIAIVIVAVVILGYVSRIGG*
Ga0078977_106242Ga0078977_1062422F103293MINIEKLKMLPPPYEIYEFVPCQPAYFKIVDVEMGRMTITPRFPGAPPRKEILAIRLHVDPKTKPFFPHYWDITPSRLVHQLAAMLLPTFPAEMWLRIHRDIPGPKAHFSVGWVEKPP*
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