NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300006460

3300006460: Human tongue dorsum microbial communities from NIH, USA - visit 2 of subject 764143897



Overview

Basic Information
IMG/M Taxon OID3300006460 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0052491 | Ga0100061
Sample NameHuman tongue dorsum microbial communities from NIH, USA - visit 2 of subject 764143897
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size115302432
Sequencing Scaffolds15
Novel Protein Genes19
Associated Families17

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonia → Candidatus Nanosynbacterales → Candidatus Nanosynbacteraceae → Candidatus Nanosynbacter → Candidatus Nanosynbacter lyticus1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 4732
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales2
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1
Not Available1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032313Metagenome180N
F046431Metagenome151Y
F046432Metagenome151Y
F054110Metagenome140N
F067846Metagenome125Y
F068942Metagenome124N
F071327Metagenome122N
F072446Metagenome121N
F073671Metagenome120N
F076191Metagenome118N
F077404Metagenome117N
F078842Metagenome116N
F080164Metagenome115N
F092230Metagenome107N
F097527Metagenome104N
F103432Metagenome101N
F105378Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0100061_100001All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonia → Candidatus Nanosynbacterales → Candidatus Nanosynbacteraceae → Candidatus Nanosynbacter → Candidatus Nanosynbacter lyticus763520Open in IMG/M
Ga0100061_100098All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus83170Open in IMG/M
Ga0100061_100359All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae40900Open in IMG/M
Ga0100061_101380All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 47315510Open in IMG/M
Ga0100061_101865All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae11813Open in IMG/M
Ga0100061_102486All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 4738889Open in IMG/M
Ga0100061_104362All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria4747Open in IMG/M
Ga0100061_104528All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella4534Open in IMG/M
Ga0100061_106298All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales2999Open in IMG/M
Ga0100061_107037All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales2584Open in IMG/M
Ga0100061_108711All Organisms → cellular organisms → Bacteria1968Open in IMG/M
Ga0100061_109470All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus1775Open in IMG/M
Ga0100061_122847All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium640Open in IMG/M
Ga0100061_123538Not Available620Open in IMG/M
Ga0100061_125513All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium559Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0100061_100001Ga0100061_100001324F078842MIISSIYKTVDNDGLIAHIYEHLLAQYVLKRLQDNEFFVLSDIILSAKTYGDTCFMDAELYSSEVKKTYDEALREFDKIVIPEDDILRAASECGIEMNRNIVEVDRSELSKKLREVQLSPWRKQIDMAYRKAHDESSVNTLFRTSYIKYSKESDDLFRECVLEYSIDESHMQTPVDQALAAIVIQIVALNFLTVVREKYTVYDRGDQWSEASISVGYRMFLGLLKKDDKIINQLSYDFLEYIKSLSSSVFCDNLQKALVRCSDNHKQVILNRSTLNAILGGCVIGGKGWLEMADSARIRQMVNSIELDIYEVNS*
Ga0100061_100001Ga0100061_100001434F076191MKIIAENPAEEALLWRIKALSDELVNQDNRSTNMPVWTILDNNKAGKDYGAVMYFTGKAAEQHINENAHHYEKPMTCVRSAHDNRELKDVIHLLILAGGNEIPSNHYGVLRDV*
Ga0100061_100098Ga0100061_10009812F073671MKKEQAEHELAELHEKERSLEKALELVREKIRELVNYTDKNKG*
Ga0100061_100098Ga0100061_10009818F067846MSIIADWERKTFNDYDRRCCAEDAYNRAIEREIECIEDDISNGDSEELWKFSEKAFEDDEFVKAIALGNDFEEMRIKILTAMAEDRLEQLEKDYRNGYILND*
Ga0100061_100359Ga0100061_10035943F054110VNYQPTIKKLLKALQMNGRRYVVDVRQSWSKYDKPCKIYIVSRMYTEEEYKLTFPHKYKKGKTFKQGQLYKKESEYSSTKQHEVLLFLVKTYKGGD*
Ga0100061_101380Ga0100061_1013801F072446MRKLLFLLSGLCLYCLAACDNDHEPTKPVRPFHGDTLAQIAWNFRFIVENHYHSIPGIVPERTTYRVPVIPRSVEDKTKKEYNDMELGKEAHLVFRATVHGDTINRRRKELDAIALQLGRLTETSIGTSPVLCGVKSIEAVGIAENGNTYDLSWEIKLRIRDYFGRVKHRSSGIVTLDCEDTQSKTAKYVVPLGSIREDELAEHIQPELKFYLPVKRCMDFSSISFAITLFNGKVLSFQHKLPSKSVLQELPSKSVLENYQQYGFIPESTYFTTLWPLPDYKYNEREL*
Ga0100061_101865Ga0100061_1018655F092230MRQAHKRMVDKLKTRLLKVFFPLFIVCIILVAFFRQIGCGSDGDYAFQISEWGAKLKNIYGTDFINKEIIVRDNAVRVDGIRCLYAVNQNEDGLSIYLLLPGGDYLTHNYVGSSFVRFSNGSEYINMAYGEGSVEVSDSTSTGEVQNTEEKEARDKVDEAINSMRHLFASAIMVNLRVVELYKILTVCMILIAIAMTIGYYSYLKPETVYDFYCKLRRKEKYPSDVNLVKRIGFLAIILPPCMLFLLIV*
Ga0100061_102486Ga0100061_1024864F103432MKLIHSLFSLPLLFVLGGLFCTTACQDDVEPTQRTGLISTDSLIHAAEVYDGKAFEHVVSTTATGLRVSEPRRVVPMLPRQLHVTMDGKTIFRRHTLPSVSAYSLQVVAVGDTIYRQKESDAQFNADLDALFRQSIGIAPRLFGVRELSVVGIDRKGKPRDLGNYSCPLLQGKRRNVNFRTKEGVFHEYFEAASVDTFSVKSNWLFKTKAEPSLYAPSFRLLVWEQPAEGCTKLRFTLTLVDGRSLVAEVPLY*
Ga0100061_102486Ga0100061_1024865F080164MRPTSFVLSLLLGVIGLAPCAARQVTLRERALAFPLITEKDATEVDAPYAWRLPVVPLSLDNREIRNFAKYPLLPSLSGGILTVRVLVVGDTVAVHQDLMDDFAKRCRTTLGFGVRTAPKLFGIKGMHVYGVQKDGSRQAVDKQVTLHLPGFEKAEKPLLYKGQEGRLVLCEYYESHRGDLFLDVANAHPEIFGELCPVVDFHFPVELRRAYAWLLLEIELEDGTKLSTSLQHYDEQTSILDHPDRS*
Ga0100061_104362Ga0100061_1043624F046432MWEMTESELSEVISKYQMPEGRYLVEQEGSFGESEFFWVIKNQSTNKKYLLVNTYSHHGVESELECYREGGFDNLEAIPRKIETLENASDADDEISKYLFGMYSIFEIKS*
Ga0100061_104528Ga0100061_1045281F032313MYRLLILLFAITLMACDNDTPQEKPREQEKHEVPVPKPKPQFDEVGERIWYGQTPAMRLDSTDYGAGLIWVLEMRTSSIPKQRFDSLFKQTVWEIKDICAVETDLSLAKKIPRFVGGSITKEFTCRNGVILRHMQGIDINLVDTVNYVYNEDLNEIVLEGTGIRWYVLRLNKNAVEFLQQGHNIWGPFDWYYGRKSGRSEVMLEAK*
Ga0100061_104528Ga0100061_1045282F032313MYRLLFLFFAVTLMACDNDTPQEKPREQEKHEVPVPKSKPQFDEVGERIWYEQTPTMRLDSTDYGAGLTPVFGMRTSSISKQRFDSLFKQTVWEIKDIRVVETDLSLAKKNPGIMGWVTTTEFTCRNGVILLHRQGIDVNHVDTVNYVYDEVGNEIVLEGTGIRWSVLRLNKNAVEFLQRGRTMWGPFDWYYGRNSGRSEVTLEAK*
Ga0100061_106298Ga0100061_1062982F077404MAQQIIMTHKLAAAALSLKEPTQIGNTQNPFAMNTLKTIFTCFFTLCFMMVANSYAQKTDSINTEAGKSVLHRNAIYIPPALEQYADTALLHQRFNVENKGNYLYTPFTEDNEPTIPFNYGFLHPLGERFYNCFMGKVDRILRPKADKGFIILTSYLVVLGDSYAFDTSNKDTSKLADLKYLDFRHIKRDFSYGHPYQGFTHNDRIELSNFVQSYGRQAALETANAWVMASYPFSLQSTKFENRYTRGRKLILTDGHSTLYLYFLMIDSVAPNFDTEVLPYIKGVFRFNRFR*
Ga0100061_107037Ga0100061_1070373F068942MIRKILSLPTLALCFTLCTALFAGCGENYDGSVTEVHWSNVKNPEYGNAINITLKAEGETFTTVGDHSWISFSNDASTLDTFTRHRFPEVDKDTAYYKDIVIYMTRNERERTTTLKLVAPPNRTQQPKQFKFSVSVTPPGLYIFKVRQPALPAKAQ*
Ga0100061_108711Ga0100061_1087115F046431PETNNIHLKWIGPQNSSYKVYQKKPGSSTFETIGLTDFSNNATDEEVKVLNVYPHSKNIGKLWEGSSAFQTLPMVNVTYLDGHTETIEKSALLKAWMEGRNSK*
Ga0100061_109470Ga0100061_1094701F097527MIYFKMEKIGNSTHNKEKKTRSENLVFNTIPAAGVEPARPCGHWVFSPARLPIPPPR
Ga0100061_122847Ga0100061_1228472F071327YICVYNLDKMEDLFNSVYSTHKGISFSTVVVFGAFIFLILQVHLSYKGRISDVLRKTSFFSMILLYIQGILGVFLGIYSPEFSEASGFSSYFKLFEYGIIILTCAGMITYVYMFLKSNQILTLKVLIIALVAALLFEYAYPWRIIFG*
Ga0100061_123538Ga0100061_1235382F105378MKVSVYVDKLKKWVPISSDEILDRNKNLSDVKDKDAAITNLGLYDKFISKEALQSGFLPDVFTPENIQTDADHQFVSDSDKNNWNNKLNKPVEIQTNLEENQIGYDEVNEKFYIGLNNKNVLIGGASALDNIKIVNGFFSGNSQPTIIRNTKTREDGTLISPIFVDVQCVEYTG
Ga0100061_125513Ga0100061_1255131F046431MKKISRISITIILILSIIISYGSVIISRAAESELTLTPKPETNNIHLKWTGPQNSSYKVYQKKPGSSNFETIGLTDFSNNATDEEVKVLNIYPQESNADGRLWPTLNPSDVANIAKVLPKVQVTYLDGQTETIQKSALLKVWMEGRNSKRR*
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